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    PF3D7_1033600 pre-mRNA-splicing factor CEF1, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 810484, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1033600
    Gene description
    pre-mRNA-splicing factor CEF1, putative
    Locus tag
    PF3D7_1033600
    See related
    PlasmoDB:PF3D7_1033600; VEuPathDB:PF3D7_1033600
    Gene type
    protein coding
    RNA name
    pre-mRNA-splicing factor CEF1, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_1033600 in Genome Data Viewer
    Location:
    chromosome: 10
    Exon count:
    1
    Sequence:
    Chromosome: 10; NC_037281.1 (1344150..1346897, complement)

    Chromosome 10 - NC_037281.1Genomic Context describing neighboring genes Neighboring gene haloacid dehalogenase-like hydrolase Neighboring gene WD repeat-containing protein 70, putative Neighboring gene bromodomain protein 1 Neighboring gene plasmepsin VII

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037281.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A densely overlapping gene fragmentation approach improves yeast two-hybrid screens for Plasmodium falciparum proteins. Brown HF, et al. Mol Biochem Parasitol, 2011 Jul-Aug. PMID 21530591, Free PMC Article
    2. Organellar proteomics reveals hundreds of novel nuclear proteins in the malaria parasite Plasmodium falciparum. Oehring SC, et al. Genome Biol, 2012 Nov 26. PMID 23181666, Free PMC Article
    3. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    part_of Prp19 complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    part_of U2-type catalytic step 1 spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-splicing factor CEF1, putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037281.1 Reference assembly

      Range
      1344150..1346897 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001347575.1 → XP_001347611.1  pre-mRNA-splicing factor CEF1, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001347611.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024V560, A0A024W6N4, A0A024WNX1, Q7KQL1, Q9GNU7, W7FL80, W7JU50
      Conserved Domains (2) summary
      COG5147
      Location:1 → 277
      REB1; Myb superfamily proteins, including transcription factors and mRNA splicing factors [Transcription / RNA processing and modification / Cell division and chromosome partitioning]
      pfam11831
      Location:528 → 721
      Myb_Cef; pre-mRNA splicing factor component
    Nucleotide Protein
    Heading Accession and Version

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