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    PF3D7_1220100 pre-mRNA-processing factor 17, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 811246, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1220100
    Gene description
    pre-mRNA-processing factor 17, putative
    Locus tag
    PF3D7_1220100
    See related
    PlasmoDB:PF3D7_1220100; VEuPathDB:PF3D7_1220100
    Gene type
    protein coding
    RNA name
    pre-mRNA-processing factor 17, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_1220100 in Genome Data Viewer
    Location:
    chromosome: 12
    Exon count:
    1
    Sequence:
    Chromosome: 12; NC_037284.1 (802544..804400)

    Chromosome 12 - NC_037284.1Genomic Context describing neighboring genes Neighboring gene ribulose-phosphate 3-epimerase, putative Neighboring gene zinc finger protein, putative Neighboring gene pseudo Neighboring gene cell cycle associated protein, putative

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037284.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556
    2. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Process Evidence Code Pubs
    acts_upstream_of_or_within generation of catalytic spliceosome for second transesterification step ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    acts_upstream_of_or_within mRNA 3'-splice site recognition ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    part_of spliceosomal complex ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    pre-mRNA-processing factor 17, putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037284.1 Reference assembly

      Range
      802544..804400
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001350564.1 → XP_001350600.1  pre-mRNA-processing factor 17, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001350600.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024V417, A0A024VQ79, A0A024W421, A0A024X3Y9, A0A0L1I623, Q8I5L1, W4ID17, W4J2K6, W7EY19, W7FRV1, W7JSC4
      Conserved Domains (2) summary
      cd00200
      Location:321 → 618
      WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
      sd00039
      Location:337 → 371
      7WD40; WD40 repeat [structural motif]
    Nucleotide Protein
    Heading Accession and Version

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