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    PF3D7_1419100 ATP-dependent rRNA helicase SPB4, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 811766, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_1419100
    Gene description
    ATP-dependent rRNA helicase SPB4, putative
    Locus tag
    PF3D7_1419100
    See related
    PlasmoDB:PF3D7_1419100; VEuPathDB:PF3D7_1419100
    Gene type
    protein coding
    RNA name
    ATP-dependent rRNA helicase SPB4, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_1419100 in Genome Data Viewer
    Location:
    chromosome: 14
    Exon count:
    1
    Sequence:
    Chromosome: 14; NC_037283.1 (793752..796877)

    Chromosome 14 - NC_037283.1Genomic Context describing neighboring genes Neighboring gene ATP-dependent RNA helicase DBP4, putative Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene thioredoxin-like protein, putative Neighboring gene glutathione S-transferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037283.1

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Plasmodium falciparum DDX55 is a nucleocytoplasmic protein and a 3'-5' direction-specific DNA helicase. Yasmin R, et al. Protoplasma, 2020 Jul. PMID 32125511
    2. Genome sequence of the human malaria parasite Plasmodium falciparum. Gardner MJ, et al. Nature, 2002 Oct 3. PMID 12368864, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Function Evidence Code Pubs
    enables 3'-5' DNA helicase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables ATP-dependent activity, acting on DNA IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables ATP-dependent activity, acting on RNA IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in nucleus IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    ATP-dependent rRNA helicase SPB4, putative
    XP_001348358.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_037283.1 Reference assembly

      Range
      793752..796877
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001348322.1 → XP_001348358.1  ATP-dependent rRNA helicase SPB4, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001348358.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024V0C7, A0A024VLS0, A0A024X1D0, A7U5X4, Q8ILQ9, W4IAL5, W4IWR7, W7K8F0
      Conserved Domains (4) summary
      PTZ00341
      Location:94 → 248
      PTZ00341; Ring-infected erythrocyte surface antigen; Provisional
      COG0513
      Location:275 → 807
      SrmB; Superfamily II DNA and RNA helicase [Replication, recombination and repair]
      pfam13959
      Location:826 → 878
      DUF4217; Domain of unknown function (DUF4217)
      cl28899
      Location:35 → 120
      DEAD-like_helicase_N; N-terminal helicase domain of the DEAD-box helicase superfamily
    Nucleotide Protein
    Heading Accession and Version

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