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    PF3D7_0922700 pre-mRNA-splicing factor 18, putative [ Plasmodium falciparum 3D7 ]

    Gene ID: 813503, updated on 12-Sep-2024

    Summary

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    Gene symbol
    PF3D7_0922700
    Gene description
    pre-mRNA-splicing factor 18, putative
    Locus tag
    PF3D7_0922700
    See related
    PlasmoDB:PF3D7_0922700; VEuPathDB:PF3D7_0922700
    Gene type
    protein coding
    RNA name
    pre-mRNA-splicing factor 18, putative
    RefSeq status
    PROVISIONAL
    Organism
    Plasmodium falciparum 3D7 (isolate: 3D7)
    Lineage
    Eukaryota; Sar; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodiidae; Plasmodium; Plasmodium (Laverania)
    Orthologs
    all
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    Genomic context

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    See PF3D7_0922700 in Genome Data Viewer
    Location:
    chromosome: 9
    Exon count:
    10
    Sequence:
    Chromosome: 9; NC_004330.2 (919109..921302, complement)

    Chromosome 9 - NC_004330.2Genomic Context describing neighboring genes Neighboring gene phosphoglycerate kinase Neighboring gene glutamine synthetase, putative Neighboring gene conserved Plasmodium protein, unknown function Neighboring gene 3-oxoacyl-[acyl-carrier-protein] reductase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_004330.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of Plasmodium falciparum nuclear proteins by mass spectrometry and proposed protein annotation. Briquet S, et al. PLoS One, 2018. PMID 30379851, Free PMC Article
    2. A protein interaction network of the malaria parasite Plasmodium falciparum. LaCount DJ, et al. Nature, 2005 Nov 3. PMID 16267556
    3. Sequence of Plasmodium falciparum chromosomes 1, 3-9 and 13. Hall N, et al. Nature, 2002 Oct 3. PMID 12368867

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by GeneDB

    Process Evidence Code Pubs
    acts_upstream_of_or_within mRNA splicing, via spliceosome ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    Component Evidence Code Pubs
    located_in nucleus HDA PubMed 

    General protein information

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    Preferred Names
    pre-mRNA-splicing factor 18, putative

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_004330.2 Reference assembly

      Range
      919109..921302 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_001352062.1 → XP_001352098.1  pre-mRNA-splicing factor 18, putative [Plasmodium falciparum 3D7]

      See identical proteins and their annotated locations for XP_001352098.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A024V6J1, A0A0L1I5P5, A0A2I0BSE5, Q8I2S9, W7JYX1
      Conserved Domains (2) summary
      pfam02840
      Location:195 → 327
      Prp18; Prp18 domain
      pfam08799
      Location:91 → 119
      PRP4; pre-mRNA processing factor 4 (PRP4) like
    Nucleotide Protein
    Heading Accession and Version

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