U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    RPS16B ribosomal 40S subunit protein S16B [ Saccharomyces cerevisiae S288C ]

    Gene ID: 851476, updated on 3-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    RPS16B
    Official Full Name
    ribosomal 40S subunit protein S16B
    Primary source
    SGD:S000002241
    Locus tag
    YDL083C
    See related
    AllianceGenome:SGD:S000002241; FungiDB:YDL083C; VEuPathDB:YDL083C
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable RNA binding activity. Predicted to be a structural constituent of ribosome. Involved in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) and translational initiation. Predicted to be located in cytoplasm and ribosome. Predicted to be part of cytosolic small ribosomal subunit. Orthologous to human RPS16 (ribosomal protein S16). [provided by Alliance of Genome Resources, Nov 2024]
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See RPS16B in Genome Data Viewer
    Location:
    chromosome: IV
    Exon count:
    2
    Sequence:
    Chromosome: IV; NC_001136.10 (306926..307789, complement)

    Chromosome IV - NC_001136.10Genomic Context describing neighboring genes Neighboring gene NADH-ubiquinone reductase (H(+)-translocating) NDE2 Neighboring gene ATP-dependent RNA helicase SUB2 Neighboring gene ribosomal 60S subunit protein L13A Neighboring gene ribosomal protein P1A

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_001136.10

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Role of the uS9/yS16 C-terminal tail in translation initiation and elongation in Saccharomyces cerevisiae. Jindal S, et al. Nucleic Acids Res, 2019 Jan 25. PMID 30481328, Free PMC Article
    2. Structure and organization of two linked ribosomal protein genes in yeast. Molenaar CM, et al. Nucleic Acids Res, 1984 Oct 11. PMID 6387623, Free PMC Article
    3. Rps5-Rps16 communication is essential for efficient translation initiation in yeast S. cerevisiae. Ghosh A, et al. Nucleic Acids Res, 2014 Jul. PMID 24948608, Free PMC Article
    4. Global analysis of Pub1p targets reveals a coordinate control of gene expression through modulation of binding and stability. Duttagupta R, et al. Mol Cell Biol, 2005 Jul. PMID 15964806, Free PMC Article
    5. Transcription factor substitution during the evolution of fungal ribosome regulation. Hogues H, et al. Mol Cell, 2008 Mar 14. PMID 18342603, Free PMC Article

    See all (90) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables RNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables structural constituent of ribosome NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in translational initiation IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic small ribosomal subunit NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    ribosomal 40S subunit protein S16B
    NP_010200.1
    • Protein component of the small (40S) ribosomal subunit; homologous to mammalian ribosomal protein S16 and bacterial S9; RPS16B has a paralog, RPS16A, that arose from the whole genome duplication

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001136.10 Reference assembly

      Range
      306926..307789 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001180142.1 → NP_010200.1  TPA: ribosomal 40S subunit protein S16B [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_010200.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      D6VRR6, P0CX51, P0CX52, P26787, P40213
      UniProtKB/TrEMBL
      A6ZMK2, B3LGX7, C7GQ83, C8Z6M1, G2WC80, N1P5Z6
      Conserved Domains (1) summary
      PLN00210
      Location:3 → 143
      PLN00210; 40S ribosomal protein S16; Provisional
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    P0CX51.1
    P0CX52.1

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Other Literature Sources
    Molecular Biology Databases
    Research Materials
    Miscellaneous