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    ybaY PF09619 family lipoprotein YbaY [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945070, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ybaY
    Official Full Name
    PF09619 family lipoprotein YbaY
    Primary source
    ECOCYC:G6250
    Locus tag
    b0453
    See related
    ASAP:ABE-0001574
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0447
    Summary
    First 18 aa are a type II signal peptide. [More information is available at EcoGene: EG13253]. YbaY is predicted to be a lipoprotein . ybaY has supercoiling-dependent transcription, which is associated with the osmotic stress response and acts through rpoS . ybaY was predicted to be a target of the small RNA OxyS. [More information is available at EcoCyc: G6250].
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    Genomic context

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    Sequence:
    NC_000913.3 (475379..475951)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ammonium transporter Neighboring gene acyl-CoA thioesterase II Neighboring gene DNA base-flipping protein Neighboring gene ncRNA

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. RpoS-regulated genes of Escherichia coli identified by random lacZ fusion mutagenesis. Vijayakumar SR, et al. J Bacteriol, 2004 Dec. PMID 15576800, Free PMC Article
    2. A microarray-based antibiotic screen identifies a regulatory role for supercoiling in the osmotic stress response of Escherichia coli. Cheung KJ, et al. Genome Res, 2003 Feb. PMID 12566398, Free PMC Article
    3. Target prediction for small, noncoding RNAs in bacteria. Tjaden B, et al. Nucleic Acids Res, 2006. PMID 16717284, Free PMC Article
    4. Cross-linking measurements of in vivo protein complex topologies. Zheng C, et al. Mol Cell Proteomics, 2011 Oct. PMID 21697552, Free PMC Article
    5. Genome-wide analysis of the general stress response network in Escherichia coli: sigmaS-dependent genes, promoters, and sigma factor selectivity. Weber H, et al. J Bacteriol, 2005 Mar. PMID 15716429, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    PF09619 family lipoprotein YbaY

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      475379..475951
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414987.3 PF09619 family lipoprotein YbaY [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414987.3

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S0FZ75
      Conserved Domains (1) summary
      COG3126
      Location:1 → 164
      YbaY; Uncharacterized lipoprotein YbaY [Function unknown]
    Nucleotide Protein
    Heading Accession and Version

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