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    C17h7orf25 similar to human chromosome 7 open reading frame 25 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 307008, updated on 9-Dec-2024

    Summary

    Official Symbol
    C17h7orf25provided by RGD
    Official Full Name
    similar to human chromosome 7 open reading frame 25provided by RGD
    Primary source
    RGD:1308147
    See related
    EnsemblRapid:ENSRNOG00000015523 AllianceGenome:RGD:1308147
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1308147
    Summary
    Orthologous to human C7orf25 (chromosome 7 open reading frame 25). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Biased expression in Liver (RPKM 97.9), Kidney (RPKM 96.3) and 9 other tissues See more
    Orthologs
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    Genomic context

    See C17h7orf25 in Genome Data Viewer
    Location:
    17q12.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 17 NC_086035.1 (55238751..55245399, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 17 NC_051352.1 (50543231..50549880, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 17 NC_005116.4 (53080629..53087335, complement)

    Chromosome 17 - NC_086035.1Genomic Context describing neighboring genes Neighboring gene HCLS1 associated protein X-1, pseudogene 1 Neighboring gene heat shock protein family D (Hsp60) member 1, pseudogene 3 Neighboring gene proteasome 20S subunit alpha 2 Neighboring gene mitochondrial ribosomal protein L32

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General protein information

    Preferred Names
    UPF0415 protein C7orf25 homolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001014010.2NP_001014032.1  UPF0415 protein C7orf25 homolog

      See identical proteins and their annotated locations for NP_001014032.1

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/Swiss-Prot
      Q5M888
      UniProtKB/TrEMBL
      A0A8I6AA39, A6K9C0
      Related
      ENSRNOP00000088598.2, ENSRNOT00000114031.2
      Conserved Domains (1) summary
      pfam07000
      Location:38401
      DUF1308; Protein of unknown function (DUF1308)
    2. NM_001419483.1NP_001406412.1  UPF0415 protein C7orf25 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/Swiss-Prot
      Q5M888
      UniProtKB/TrEMBL
      A0A8I6AA39, A6K9C0
      Related
      ENSRNOP00000105727.1, ENSRNOT00000132301.1
    3. NM_001419484.1NP_001406413.1  UPF0415 protein C7orf25 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/Swiss-Prot
      Q5M888
      UniProtKB/TrEMBL
      A0A8I6AA39, A6K9C0
      Related
      ENSRNOP00000108374.1, ENSRNOT00000153560.1
    4. NM_001419485.1NP_001406414.1  UPF0415 protein C7orf25 homolog

      Status: VALIDATED

      Source sequence(s)
      JAXUCZ010000017
      UniProtKB/Swiss-Prot
      Q5M888
      UniProtKB/TrEMBL
      A0A8I6AA39, A6K9C0
      Related
      ENSRNOP00000096046.1, ENSRNOT00000114059.2

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086035.1 Reference GRCr8

      Range
      55238751..55245399 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)