U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Tstd2 thiosulfate sulfurtransferase like domain containing 2 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 362514, updated on 2-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Tstd2provided by RGD
    Official Full Name
    thiosulfate sulfurtransferase like domain containing 2provided by RGD
    Primary source
    RGD:1310893
    See related
    EnsemblRapid:ENSRNOG00000009724 AllianceGenome:RGD:1310893
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Also known as
    RGD1310893
    Summary
    Orthologous to human TSTD2 (thiosulfate sulfurtransferase like domain containing 2). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Biased expression in Muscle (RPKM 126.6), Heart (RPKM 124.8) and 9 other tissues See more
    Orthologs
    human mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Tstd2 in Genome Data Viewer
    Location:
    5q22
    Exon count:
    14
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 5 NC_086023.1 (65167362..65211525, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 5 NC_051340.1 (60371751..60415916, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 5 NC_005104.4 (61693203..61734011, complement)

    Chromosome 5 - NC_086023.1Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 180 Neighboring gene uncharacterized LOC120102865 Neighboring gene uncharacterized LOC120102866 Neighboring gene tudor domain containing 7 Neighboring gene tropomodulin 1 Neighboring gene nuclear cap binding protein subunit 1 Neighboring gene XPA, DNA damage recognition and repair factor Neighboring gene sorbitol dehydrogenase, pseudogene 4

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2
    Names
    thiosulfate sulfurtransferase (rhodanese)-like domain containing 2

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001108663.1 → NP_001102133.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2

      See identical proteins and their annotated locations for NP_001102133.1

      Status: PROVISIONAL

      Source sequence(s)
      CH473962
      UniProtKB/TrEMBL
      A6IJB0, D4ADA5
      Related
      ENSRNOP00000012915.5, ENSRNOT00000012915.7
      Conserved Domains (3) summary
      PRK01415
      Location:164 → 409
      PRK01415; hypothetical protein; Validated
      cd01518
      Location:278 → 388
      RHOD_YceA; Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
      pfam12368
      Location:397 → 459
      Rhodanese_C; Rhodanase C-terminal

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086023.1 Reference GRCr8

      Range
      65167362..65211525 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063287911.1 → XP_063143981.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X3

    2. XM_063287914.1 → XP_063143984.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X3

    3. XM_006238089.4 → XP_006238151.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X3

      See identical proteins and their annotated locations for XP_006238151.1

      UniProtKB/TrEMBL
      A0A0G2KB35
      Conserved Domains (3) summary
      PRK01415
      Location:164 → 409
      PRK01415; hypothetical protein; Validated
      cd01518
      Location:278 → 388
      RHOD_YceA; Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
      pfam12368
      Location:397 → 416
      Rhodanese_C; Rhodanase C-terminal

    4. XM_063287912.1 → XP_063143982.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X3

    5. XM_063287910.1 → XP_063143980.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X3

      Related
      ENSRNOP00000107704.1, ENSRNOT00000157050.1

    6. XM_006238086.4 → XP_006238148.3  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X1

      Related
      ENSRNOP00000110236.1, ENSRNOT00000152823.1

    7. XM_006238084.3 → XP_006238146.3  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X1

    8. XM_006238090.5 → XP_006238152.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X3

      See identical proteins and their annotated locations for XP_006238152.1

      UniProtKB/TrEMBL
      A0A0G2KB35
      Conserved Domains (3) summary
      PRK01415
      Location:164 → 409
      PRK01415; hypothetical protein; Validated
      cd01518
      Location:278 → 388
      RHOD_YceA; Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
      pfam12368
      Location:397 → 416
      Rhodanese_C; Rhodanase C-terminal

    9. XM_063287913.1 → XP_063143983.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X3

    10. XM_006238085.5 → XP_006238147.3  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X1

    11. XM_039110233.2 → XP_038966161.2  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X1

    12. XM_006238088.4 → XP_006238150.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X2

      See identical proteins and their annotated locations for XP_006238150.1

      UniProtKB/TrEMBL
      A6IJB0, D4ADA5
      Conserved Domains (3) summary
      PRK01415
      Location:164 → 409
      PRK01415; hypothetical protein; Validated
      cd01518
      Location:278 → 388
      RHOD_YceA; Member of the Rhodanese Homology Domain superfamily. This CD includes Escherichia coli YceA, Bacillus subtilis YbfQ, and similar uncharacterized proteins.
      pfam12368
      Location:397 → 459
      Rhodanese_C; Rhodanase C-terminal

    13. XM_063287915.1 → XP_063143985.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X4

    14. XM_063287909.1 → XP_063143979.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X2

      UniProtKB/TrEMBL
      A6IJB0, D4ADA5

    15. XM_063287916.1 → XP_063143986.1  thiosulfate sulfurtransferase/rhodanese-like domain-containing protein 2 isoform X5

    RNA

    1. XR_010066411.1 RNA Sequence

    2. XR_010066410.1 RNA Sequence

    3. XR_010066412.1 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools