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    Abcf3 ATP-binding cassette, sub-family F member 3 [ Mus musculus (house mouse) ]

    Gene ID: 27406, updated on 9-Dec-2024

    Summary

    Official Symbol
    Abcf3provided by MGI
    Official Full Name
    ATP-binding cassette, sub-family F member 3provided by MGI
    Primary source
    MGI:MGI:1351656
    See related
    Ensembl:ENSMUSG00000003234 AllianceGenome:MGI:1351656
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Summary
    Predicted to enable ATP binding activity. Predicted to be involved in defense response to virus. Is expressed in head mesenchyme; limb; skeletal musculature; tail; and tongue mesenchyme. Orthologous to human ABCF3 (ATP binding cassette subfamily F member 3). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in testis adult (RPKM 21.7), cerebellum adult (RPKM 14.5) and 28 other tissues See more
    Orthologs
    NEW
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    Genomic context

    See Abcf3 in Genome Data Viewer
    Location:
    16 A3; 16 12.46 cM
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 16 NC_000082.7 (20367309..20380357)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 16 NC_000082.6 (20548556..20561603)

    Chromosome 16 - NC_000082.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer ABC_E1488 Neighboring gene adaptor-related protein complex 2, mu 1 subunit Neighboring gene mitochondrial ribosomal protein S18B pseudogene Neighboring gene predicted gene, 20164 Neighboring gene predicted gene, 35685 Neighboring gene von Willebrand factor A domain containing 5B2

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Targeted (1) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATP binding IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables ATP hydrolysis activity IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Process Evidence Code Pubs
    involved_in defense response to virus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    ATP-binding cassette sub-family F member 3
    Names
    ATP-binding cassette, sub-family F (GCN20), member 3

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_013852.2NP_038880.1  ATP-binding cassette sub-family F member 3

      See identical proteins and their annotated locations for NP_038880.1

      Status: VALIDATED

      Source sequence(s)
      AC087898, BC032923, CD540120
      Consensus CDS
      CCDS28049.1
      UniProtKB/Swiss-Prot
      Q8K268, Q9JL49
      UniProtKB/TrEMBL
      A0A338P6L5
      Related
      ENSMUSP00000003319.6, ENSMUST00000003319.6
      Conserved Domains (4) summary
      cd03221
      Location:492683
      ABCF_EF-3; ATP-binding cassette domain of elongation factor 3, subfamily F
      PLN03073
      Location:6700
      PLN03073; ABC transporter F family; Provisional
      pfam12848
      Location:395477
      ABC_tran_Xtn; ABC transporter
      cl21455
      Location:266363
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RNA

    1. NR_190180.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC087898

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000082.7 Reference GRCm39 C57BL/6J

      Range
      20367309..20380357
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_384567.5 RNA Sequence