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    Speer4f1 spermatogenesis associated glutamate (E)-rich protein 4F1 [ Mus musculus (house mouse) ]

    Gene ID: 70935, updated on 27-Nov-2024

    Summary

    Official Symbol
    Speer4f1provided by MGI
    Official Full Name
    spermatogenesis associated glutamate (E)-rich protein 4F1provided by MGI
    Primary source
    MGI:MGI:1918185
    See related
    Ensembl:ENSMUSG00000058643 AllianceGenome:MGI:1918185
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Speer4f; SPEER-4F; 4922502J04Rik
    Expression
    Restricted expression toward testis adult (RPKM 3.9) See more
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    Genomic context

    See Speer4f1 in Genome Data Viewer
    Location:
    5 A3; 5 7.98 cM
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 5 NC_000071.7 (17681120..17685934)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 5 NC_000071.6 (17476122..17480936)

    Chromosome 5 - NC_000071.7Genomic Context describing neighboring genes Neighboring gene predicted gene 6673 Neighboring gene spermatogenesis associated glutamate (E)-rich protein 4f2 Neighboring gene heterogeneous nuclear ribonucleoprotein A3 pseudogene Neighboring gene predicted gene, 31555

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (1) 

    General gene information

    Markers

    Clone Names

    • MGC151278, MGC151280

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
     
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
     
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
     

    General protein information

    Preferred Names
    spermatogenesis associated glutamate (E)-rich protein 4F1
    Names
    sperm-associated glutamate (E)-rich protein 4f
    spermatogenesis associated glutamate (E)-rich protein 4f
    spermatogenic-associated glutamate (E)-rich protein 4f

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_027609.2NP_081885.1  spermatogenesis associated glutamate (E)-rich protein 4F1

      See identical proteins and their annotated locations for NP_081885.1

      Status: PROVISIONAL

      Source sequence(s)
      AK015022
      Consensus CDS
      CCDS19098.1
      UniProtKB/TrEMBL
      Q9D5Q6
      Related
      ENSMUSP00000075467.4, ENSMUST00000076099.4
      Conserved Domains (1) summary
      pfam04822
      Location:52127
      Takusan; Takusan

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000071.7 Reference GRCm39 C57BL/6J

      Range
      17681120..17685934
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)