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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001113213.2 → NP_001106684.1 outer dense fiber protein 2 isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) uses a different splice site, compared to variant 4. The resulting protein (isoform a) is shorter by 1 aa when it is compared to isoform d. Variants 1 and 6 both encode the same isoform (a).
- Source sequence(s)
-
AL928926
- Consensus CDS
-
CCDS50556.1
- UniProtKB/Swiss-Prot
-
A3KGV1
- UniProtKB/TrEMBL
-
Q3UFG2
- Related
- ENSMUSP00000109385.2, ENSMUST00000113756.8
- Conserved Domains (1) summary
-
- COG1196
Location:114 → 802
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
NM_001113214.2 → NP_001106685.1 outer dense fiber protein 2 isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) uses a different splice site and contains a different 3' end, compared to variant 4. The resulting protein (isoform b) has a shorter and distinct C-terminus when it is compared to isoform d. Variants 2 and 7 both encode the same isoform (a).
- Source sequence(s)
-
AL928926
- Consensus CDS
-
CCDS50557.1
- UniProtKB/TrEMBL
-
V9GXZ0
- Related
- ENSMUSP00000109384.2, ENSMUST00000113755.8
- Conserved Domains (1) summary
-
- COG1196
Location:114 → 446
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
NM_001177659.2 → NP_001171130.1 outer dense fiber protein 2 isoform d
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) encodes isoform d.
- Source sequence(s)
-
AL928926
- Consensus CDS
-
CCDS50555.1
- UniProtKB/Swiss-Prot
-
A3KGV1
- Related
- ENSMUSP00000109388.3, ENSMUST00000113759.9
- Conserved Domains (1) summary
-
- COG1196
Location:114 → 803
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
NM_001177661.2 → NP_001171132.1 outer dense fiber protein 2 isoform e
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) has multiple differences that result in a different splice site and distinct 5' and 3' ends, compared to variant 4. The encoded protein (isoform c) has shorter and distinct termini when it is compared to isoform e.
- Source sequence(s)
-
AL928926
- Consensus CDS
-
CCDS50554.1
- UniProtKB/TrEMBL
- A3KGV9, A3KGW0
- Related
- ENSMUSP00000109396.2, ENSMUST00000113767.8
- Conserved Domains (1) summary
-
- cl25732
Location:163 → 495
- SMC_N; RecF/RecN/SMC N terminal domain
-
NM_001355136.2 → NP_001342065.1 outer dense fiber protein 2 isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (6), as well as variant 1, encodes isoform a.
- Source sequence(s)
-
AL928926
- Consensus CDS
-
CCDS50556.1
- Related
- ENSMUSP00000049272.8, ENSMUST00000046571.14
- Conserved Domains (1) summary
-
- COG1196
Location:114 → 802
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
NM_001355137.2 → NP_001342066.1 outer dense fiber protein 2 isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (7), as well as variant 2, encodes isoform b.
- Source sequence(s)
-
AL928926
- Consensus CDS
-
CCDS50557.1
- UniProtKB/TrEMBL
-
V9GXZ0
- Conserved Domains (1) summary
-
- COG1196
Location:114 → 446
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
NM_001355138.2 → NP_001342067.1 outer dense fiber protein 2 isoform f
Status: VALIDATED
- Source sequence(s)
-
AL928926
- UniProtKB/TrEMBL
-
V9GXZ0
- Conserved Domains (1) summary
-
- cl25732
Location:95 → 427
- SMC_N; RecF/RecN/SMC N terminal domain
-
NM_001369060.2 → NP_001355989.1 outer dense fiber protein 2 isoform g
Status: VALIDATED
- Description
- Transcript Variant: This variant (9), encodes the longest isoform (g).
- Source sequence(s)
-
AL928926
- Consensus CDS
-
CCDS89461.1
- UniProtKB/Swiss-Prot
- A3KGV1, A3KGV5, A3KGV6, O35135, O35496, Q3TH68, Q3UP80, Q6PGI6
- Related
- ENSMUSP00000109394.2, ENSMUST00000113765.8
- Conserved Domains (1) summary
-
- COG1196
Location:119 → 807
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
NM_001374179.1 → NP_001361108.1 outer dense fiber protein 2 isoform h
Status: VALIDATED
- Source sequence(s)
-
AL928926
- Conserved Domains (1) summary
-
- COG1196
Location:72 → 760
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
NM_001374180.1 → NP_001361109.1 outer dense fiber protein 2 isoform a
Status: VALIDATED
- Source sequence(s)
-
AL928926
- Consensus CDS
-
CCDS50556.1
- Related
- ENSMUSP00000139390.2, ENSMUST00000184845.8
- Conserved Domains (1) summary
-
- COG1196
Location:114 → 802
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
NM_001374181.1 → NP_001361110.1 outer dense fiber protein 2 isoform i
Status: VALIDATED
- Source sequence(s)
-
AL928926
- Consensus CDS
-
CCDS89462.1
- Conserved Domains (1) summary
-
- COG1196
Location:95 → 783
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
NM_001374182.1 → NP_001361111.1 outer dense fiber protein 2 isoform i
Status: VALIDATED
- Source sequence(s)
-
AL928926
- Consensus CDS
-
CCDS89462.1
- Related
- ENSMUSP00000109386.2, ENSMUST00000113757.8
- Conserved Domains (1) summary
-
- COG1196
Location:95 → 783
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
NM_013615.4 → NP_038643.1 outer dense fiber protein 2 isoform c
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) has multiple differences that result in a different splice site and distinct 5' and 3' ends, compared to variant 4. The encoded protein (isoform c) has shorter and distinct termini when it is compared to isoform d.
- Source sequence(s)
-
AL928926
- Consensus CDS
-
CCDS15861.1
- UniProtKB/TrEMBL
-
A3KGV9
- Related
- ENSMUSP00000028128.7, ENSMUST00000028128.13
- Conserved Domains (1) summary
-
- cl25732
Location:100 → 432
- SMC_N; RecF/RecN/SMC N terminal domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000068.8 Reference GRCm39 C57BL/6J
- Range
-
29779026..29821758
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017316279.2 → XP_017171768.1 outer dense fiber protein 2 isoform X4
- Conserved Domains (1) summary
-
- COG1196
Location:120 → 809
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_036159407.1 → XP_036015300.1 outer dense fiber protein 2 isoform X5
- Conserved Domains (1) summary
-
- COG1196
Location:120 → 808
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_030248314.1 → XP_030104174.1 outer dense fiber protein 2 isoform X9
- Conserved Domains (1) summary
-
- COG1196
Location:101 → 789
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_017316291.1 → XP_017171780.1 outer dense fiber protein 2 isoform X7
- UniProtKB/Swiss-Prot
-
A3KGV1
- Conserved Domains (1) summary
-
- COG1196
Location:114 → 803
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_017316301.1 → XP_017171790.1 outer dense fiber protein 2 isoform X12
- Conserved Domains (1) summary
-
- COG1196
Location:95 → 784
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_036159440.1 → XP_036015333.1 outer dense fiber protein 2 isoform X13
- Conserved Domains (1) summary
-
- COG1196
Location:95 → 783
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_036159428.1 → XP_036015321.1 outer dense fiber protein 2 isoform X8
- Conserved Domains (1) summary
-
- COG1196
Location:114 → 802
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_017316304.1 → XP_017171793.1 outer dense fiber protein 2 isoform X13
- UniProtKB/Swiss-Prot
-
A3KGV1
- Conserved Domains (1) summary
-
- COG1196
Location:95 → 783
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_017316272.3 → XP_017171761.1 outer dense fiber protein 2 isoform X1
- Conserved Domains (1) summary
-
- COG1196
Location:163 → 852
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_017316275.3 → XP_017171764.1 outer dense fiber protein 2 isoform X2
- Conserved Domains (1) summary
-
- COG1196
Location:144 → 833
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_017316276.3 → XP_017171765.1 outer dense fiber protein 2 isoform X3
- Conserved Domains (1) summary
-
- COG1196
Location:144 → 832
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_017316300.2 → XP_017171789.1 outer dense fiber protein 2 isoform X12
- Conserved Domains (1) summary
-
- COG1196
Location:95 → 784
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_036159427.1 → XP_036015320.1 outer dense fiber protein 2 isoform X8
- Conserved Domains (1) summary
-
- COG1196
Location:114 → 802
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_017316295.3 → XP_017171784.1 outer dense fiber protein 2 isoform X10
- Conserved Domains (1) summary
-
- COG1196
Location:100 → 789
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_030248309.2 → XP_030104169.1 outer dense fiber protein 2 isoform X6
- UniProtKB/Swiss-Prot
- A3KGV1, A3KGV5, A3KGV6, O35135, O35496, Q3TH68, Q3UP80, Q6PGI6
- Conserved Domains (1) summary
-
- COG1196
Location:119 → 807
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_017316292.2 → XP_017171781.1 outer dense fiber protein 2 isoform X7
- UniProtKB/Swiss-Prot
-
A3KGV1
- Conserved Domains (1) summary
-
- COG1196
Location:114 → 803
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_036159437.1 → XP_036015330.1 outer dense fiber protein 2 isoform X12
- Conserved Domains (1) summary
-
- COG1196
Location:95 → 784
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_036159412.1 → XP_036015305.1 outer dense fiber protein 2 isoform X7
- Conserved Domains (1) summary
-
- COG1196
Location:114 → 803
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_017316290.3 → XP_017171779.1 outer dense fiber protein 2 isoform X7
- UniProtKB/Swiss-Prot
-
A3KGV1
- Conserved Domains (1) summary
-
- COG1196
Location:114 → 803
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_017316294.3 → XP_017171783.1 outer dense fiber protein 2 isoform X10
- Conserved Domains (1) summary
-
- COG1196
Location:100 → 789
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_017316293.3 → XP_017171782.1 outer dense fiber protein 2 isoform X8
- UniProtKB/Swiss-Prot
-
A3KGV1
- Conserved Domains (1) summary
-
- COG1196
Location:114 → 802
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_017316299.3 → XP_017171788.1 outer dense fiber protein 2 isoform X11
- Conserved Domains (1) summary
-
- COG1196
Location:100 → 788
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
-
XM_036159408.1 → XP_036015301.1 outer dense fiber protein 2 isoform X6
- UniProtKB/Swiss-Prot
- A3KGV1, A3KGV5, A3KGV6, O35135, O35496, Q3TH68, Q3UP80, Q6PGI6
- Conserved Domains (1) summary
-
- COG1196
Location:119 → 807
- Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
RNA
-
XR_003951351.2 RNA Sequence
-
XR_003951352.2 RNA Sequence
-
XR_003951350.2 RNA Sequence