U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Gml2 glycosylphosphatidylinositol anchored molecule like 2 [ Mus musculus (house mouse) ]

    Gene ID: 15202, updated on 27-Nov-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    Gml2provided by MGI
    Official Full Name
    glycosylphosphatidylinositol anchored molecule like 2provided by MGI
    Primary source
    MGI:MGI:1341831
    See related
    Ensembl:ENSMUSG00000068600 AllianceGenome:MGI:1341831
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    HemT; Hemt1; 1700057K19Rik
    Summary
    Orthologous to human GML (glycosylphosphatidylinositol anchored molecule like). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Restricted expression toward testis adult (RPKM 31.5) See more
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    See Gml2 in Genome Data Viewer
    Location:
    15 D3; 15 34.28 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (74690791..74717997)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (74818941..74846148)

    Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 33174 Neighboring gene lymphocyte antigen 6 family member K Neighboring gene STARR-seq mESC enhancer starr_38997 Neighboring gene glycosylphosphatidylinositol anchored molecule like Neighboring gene cytochrome P450, family 11, subfamily b, polypeptide 1 Neighboring gene Cyp11b2 promoter Neighboring gene cytochrome P450, family 11, subfamily b, polypeptide 2 Neighboring gene predicted gene, 41347 Neighboring gene STARR-seq mESC enhancer starr_38998 Neighboring gene lymphocyte antigen 6 family member M

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. A novel mouse gene, HemT, encoding an hematopoietic cell-specific transcript. Xue H, et al. Gene, 1999 Apr 29. PMID 10231568
    2. Organization, evolution and functions of the human and mouse Ly6/uPAR family genes. Loughner CL, et al. Hum Genomics, 2016 Apr 21. PMID 27098205, Free PMC Article
    3. Characterization of the piRNA complex from rat testes. Lau NC, et al. Science, 2006 Jul 21. PMID 16778019
    4. Antisense transcription in the mammalian transcriptome. Katayama S, et al. Science, 2005 Sep 2. PMID 16141073
    5. High-efficiency full-length cDNA cloning. Carninci P, et al. Methods Enzymol, 1999. PMID 10349636

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables molecular_function ND
    No biological Data available
    more info
    		  
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cellular_component ND
    No biological Data available
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    hematopoietic cell transcript 1
    Names
    hematopoietic cell-specific transcript

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_010416.2 → NP_034546.2  hematopoietic cell transcript 1 precursor

      See identical proteins and their annotated locations for NP_034546.2

      Status: VALIDATED

      Source sequence(s)
      AK005659, AK005823, AK006826
      Consensus CDS
      CCDS27534.1
      UniProtKB/TrEMBL
      G5E8L7, Q9DAP4
      Related
      ENSMUSP00000094130.2, ENSMUST00000096399.8
      Conserved Domains (1) summary
      cd00117
      Location:47 → 131
      LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000081.7 Reference GRCm39 C57BL/6J

      Range
      74690791..74717997
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_006520453.3 → XP_006520516.1  hematopoietic cell transcript 1 isoform X2

      See identical proteins and their annotated locations for XP_006520516.1

      UniProtKB/TrEMBL
      G5E8L7, Q9DAP4
      Conserved Domains (1) summary
      cd00117
      Location:47 → 131
      LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

    2. XM_006520452.3 → XP_006520515.1  hematopoietic cell transcript 1 isoform X1

      UniProtKB/TrEMBL
      Q9DAP4
      Conserved Domains (1) summary
      cd00117
      Location:81 → 165
      LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

    3. XM_006520454.3 → XP_006520517.1  hematopoietic cell transcript 1 isoform X2

      See identical proteins and their annotated locations for XP_006520517.1

      UniProtKB/TrEMBL
      G5E8L7, Q9DAP4
      Conserved Domains (1) summary
      cd00117
      Location:47 → 131
      LU; Ly-6 antigen / uPA receptor -like domain; occurs singly in GPI-linked cell-surface glycoproteins (Ly-6 family,CD59, thymocyte B cell antigen, Sgp-2) or as three-fold repeated domain in urokinase-type plasminogen activator receptor. Topology of these ...

    RNA

    1. XR_003951355.2 RNA Sequence

    Nucleotide Protein Strain
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Molecular Biology Databases
    Research Materials
    Tools