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    2310057M21Rik RIKEN cDNA 2310057M21 gene [ Mus musculus (house mouse) ]

    Gene ID: 68277, updated on 27-Dec-2024

    Summary

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    Official Symbol
    2310057M21Rikprovided by MGI
    Official Full Name
    RIKEN cDNA 2310057M21 geneprovided by MGI
    Primary source
    MGI:MGI:1915527
    See related
    Ensembl:ENSMUSG00000040177 AllianceGenome:MGI:1915527
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    PAAT; 3110040E10Rik
    Summary
    Enables identical protein binding activity. Predicted to be involved in chromatin looping and chromatin remodeling. Predicted to be located in mitochondrion. Is expressed in sensory organ; skeleton; and tarsus. Orthologous to several human genes including C10orf88 (chromosome 10 open reading frame 88). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in placenta adult (RPKM 2.4), CNS E18 (RPKM 2.0) and 28 other tissues See more
    Orthologs
    human all
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    Genomic context

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    See 2310057M21Rik in Genome Data Viewer
    Location:
    7 F3; 7 73.88 cM
    Exon count:
    7
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 7 NC_000073.7 (130943340..130964570, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 7 NC_000073.6 (131340862..131362843, complement)

    Chromosome 7 - NC_000073.7Genomic Context describing neighboring genes Neighboring gene family with sequence similarity 24 member B Neighboring gene family with sequence similarity 24, member A Neighboring gene STARR-positive B cell enhancer ABC_E9713 Neighboring gene STARR-positive B cell enhancer ABC_E8214 Neighboring gene STARR-seq mESC enhancer starr_20280 Neighboring gene phosphoseryl-tRNA kinase Neighboring gene STARR-seq mESC enhancer starr_20281 Neighboring gene IKAROS family zinc finger 5 Neighboring gene STARR-positive B cell enhancer ABC_E4981 Neighboring gene acyl-Coenzyme A dehydrogenase, short/branched chain

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

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    Related articles in PubMed

    1. Protein-protein interaction panel using mouse full-length cDNAs. Suzuki H, et al. Genome Res, 2001 Oct. PMID 11591653, Free PMC Article
    2. Database resources of the National Center for Biotechnology Information. Wheeler DL, et al. Nucleic Acids Res, 2001 Jan 1. PMID 11125038, Free PMC Article
    3. BGEM: an in situ hybridization database of gene expression in the embryonic and adult mouse nervous system. Magdaleno S, et al. PLoS Biol, 2006 Apr. PMID 16602821, Free PMC Article
    4. Genome-wide expression profiling of mid-gestation placenta and embryo using a 15,000 mouse developmental cDNA microarray. Tanaka TS, et al. Proc Natl Acad Sci U S A, 2000 Aug 1. PMID 10922068, Free PMC Article
    5. A high-resolution anatomical atlas of the transcriptome in the mouse embryo. Diez-Roux G, et al. PLoS Biol, 2011 Jan 18. PMID 21267068, Free PMC Article

    See all (14) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Variation

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    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATP hydrolysis activity ISO
    Inferred from Sequence Orthology
    more info
    		  
    enables ATP hydrolysis activity ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    enables ATP-dependent H2AZ histone chaperone activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ATP-dependent H3-H4 histone complex chaperone activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables DNA clamp loader activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables chromatin extrusion motor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables cohesin loader activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables identical protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in biological_process ND
    No biological Data available
    more info
    		  
    involved_in chromatin looping IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in chromatin remodeling IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in cytoplasm ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
    		  
    located_in mitochondrion ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    ATPase PAAT
    Names
    protein associated with ABC transporters
    uncharacterized protein C10orf88 homolog
    NP_080931.1
    XP_011240190.1
    XP_030098811.1

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_026655.4 → NP_080931.1  ATPase PAAT

      See identical proteins and their annotated locations for NP_080931.1

      Status: VALIDATED

      Source sequence(s)
      AK019097, AK148008, BY035992
      Consensus CDS
      CCDS40159.1
      UniProtKB/Swiss-Prot
      Q9D2Q3
      UniProtKB/TrEMBL
      A0A140LJB8
      Related
      ENSMUSP00000050128.10, ENSMUST00000059438.11
      Conserved Domains (1) summary
      pfam14958
      Location:59 → 197
      DUF4506; Domain of unknown function (DUF4506)

    RNA

    1. NR_152380.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC156606, AK148008, BC052432, BY035992

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000073.7 Reference GRCm39 C57BL/6J

      Range
      130943340..130964570 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011241888.4 → XP_011240190.1  ATPase PAAT isoform X1

      See identical proteins and their annotated locations for XP_011240190.1

      UniProtKB/Swiss-Prot
      Q9D2Q3
      UniProtKB/TrEMBL
      A0A140LJB8
      Conserved Domains (1) summary
      pfam14958
      Location:59 → 197
      DUF4506; Domain of unknown function (DUF4506)

    2. XM_030242951.2 → XP_030098811.1  ATPase PAAT isoform X2

    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9D2Q3.1 GenPept UniProtKB/Swiss-Prot:Q9D2Q3

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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