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    ybdF PF04237 family protein YbdF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948302, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ybdF
    Official Full Name
    PF04237 family protein YbdF
    Primary source
    ECOCYC:G6324
    Locus tag
    b0579
    See related
    ASAP:ABE-0001986
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0571
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    Genomic context

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    Sequence:
    NC_000913.3 (605518..605886, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene miniconductance mechanosensitive channel YbdG Neighboring gene NAD(P)H-dependent nitroreductase NfsB Neighboring gene DUF1158 domain-containing protein YbdJ Neighboring gene putative glutamate--cysteine ligase 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Physical characterisation of the Escherichia coli B gene encoding nitroreductase and its over-expression in Escherichia coli K12. Michael NP, et al. FEMS Microbiol Lett, 1994 Dec 1. PMID 7813889
    2. A novel family of Escherichia coli toxin-antitoxin gene pairs. Brown JM, et al. J Bacteriol, 2003 Nov. PMID 14594833, Free PMC Article
    3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    PF04237 family protein YbdF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      605518..605886 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415111.1 PF04237 family protein YbdF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415111.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9ALX0, A0A8S7EE55
      Conserved Domains (1) summary
      PRK10250
      Location:1 → 122
      PRK10250; MmcQ/YjbR family DNA-binding protein
    Nucleotide Protein
    Heading Accession and Version

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