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    yafY inner membrane lipoprotein YafY [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 944934, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yafY
    Official Full Name
    inner membrane lipoprotein YafY
    Primary source
    ECOCYC:G6126
    Locus tag
    b0251
    See related
    ASAP:ABE-0000853
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0253
    Summary
    yfjS and yafY are homologs. [More information is available at EcoGene: EG13337]. YafY is an inner membrane lipoprotein. [More information is available at EcoCyc: G6126].
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    Genomic context

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    Sequence:
    NC_000913.3 (266110..266553, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YkfF Neighboring gene protein YkfB Neighboring gene pseudo Neighboring gene pseudo Neighboring gene DUF932 domain-containing protein YafZ

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Effects of lipoprotein overproduction on the induction of DegP (HtrA) involved in quality control in the Escherichia coli periplasm. Miyadai H, et al. J Biol Chem, 2004 Sep 17. PMID 15252048
    2. Prediction of lipoprotein signal peptides in Gram-negative bacteria. Juncker AS, et al. Protein Sci, 2003 Aug. PMID 12876315, Free PMC Article
    3. Fine-tuning the prediction of sequences cleaved by signal peptidase II: a curated set of proven and predicted lipoproteins of Escherichia coli K-12. Gonnet P, et al. Proteomics, 2004 Jun. PMID 15174130
    4. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    5. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    inner membrane lipoprotein YafY

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      266110..266553 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414785.4 inner membrane lipoprotein YafY [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414785.4

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P77365
    Nucleotide Protein
    Heading Accession and Version

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