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    Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [ Arabidopsis thaliana (thale cress) ]

    Gene ID: 831506, updated on 18-Sep-2024

    Summary

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    Official Full Name
    Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
    Primary source
    TAIR:AT5G16450
    Locus tag
    AT5G16450
    See related
    Araport:AT5G16450
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Arabidopsis thaliana (ecotype: Columbia)
    Lineage
    Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
    Also known as
    MQK4.18; MQK4_18
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    Genomic context

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    Location:
    chromosome: 5
    Exon count:
    3
    Sequence:
    Chromosome: 5; NC_003076.8 (5373820..5375459)

    Chromosome 5 - NC_003076.8Genomic Context describing neighboring genes Neighboring gene Cysteine/Histidine-rich C1 domain family protein Neighboring gene isopentenyl diphosphate isomerase 1 Neighboring gene ncRNA Neighboring gene Defensin-like (DEFL) family protein Neighboring gene Putative adipose-regulatory protein (Seipin) Neighboring gene zinc finger (C2H2 type) family protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003076.8

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Global Analysis of Membrane-associated Protein Oligomerization Using Protein Correlation Profiling. McBride Z, et al. Mol Cell Proteomics, 2017 Nov. PMID 28887381, Free PMC Article
    2. Sequence and analysis of chromosome 5 of the plant Arabidopsis thaliana. Tabata S, et al. Nature, 2000 Dec 14. PMID 11130714

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    NM_121650.4
    NM_180499.2

    Gene Ontology Provided by TAIR

    Function Evidence Code Pubs
    enables 4-hydroxy-4-methyl-2-oxoglutarate aldolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxaloacetate decarboxylase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ribonuclease inhibitor activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in regulation of RNA metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm ISM
    Inferred from Sequence Model
    more info
    		  
    located_in plastid HDA PubMed 

    General protein information

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    Preferred Names
    Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase
    NP_197149.1
    • Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; FUNCTIONS IN: ribonuclease inhibitor activity; INVOLVED IN: regulation of RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (InterPro:IPR005493), Ribonuclease E inhibitor RraA (InterPro:IPR010203); BEST Arabidopsis thaliana protein match is: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (TAIR:AT3G02770.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
    NP_850830.1
    • Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase; FUNCTIONS IN: ribonuclease inhibitor activity; INVOLVED IN: regulation of RNA metabolic process; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (InterPro:IPR005493), Ribonuclease E inhibitor RraA (InterPro:IPR010203); BEST Arabidopsis thaliana protein match is: Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase (TAIR:AT3G02770.1); Has 3649 Blast hits to 3649 proteins in 1097 species: Archae - 92; Bacteria - 2860; Metazoa - 2; Fungi - 59; Plants - 104; Viruses - 0; Other Eukaryotes - 532 (source: NCBI BLink).

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003076.8 Reference assembly

      Range
      5373820..5375459
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_121650.4 → NP_197149.1  Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_197149.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LEV6, Q9FFE0
      UniProtKB/TrEMBL
      A0A178UQH0, A0A384KR22, B9DH14
      Conserved Domains (1) summary
      TIGR01935
      Location:6 → 160
      NOT-MenG; RraA famliy

    2. NM_180499.2 → NP_850830.1  Ribonuclease E inhibitor RraA/Dimethylmenaquinone methyltransferase [Arabidopsis thaliana]

      See identical proteins and their annotated locations for NP_850830.1

      Status: REVIEWED

      UniProtKB/Swiss-Prot
      Q8LEV6, Q9FFE0
      UniProtKB/TrEMBL
      A0A178UQH0, A0A384KR22, B9DH14
      Conserved Domains (1) summary
      TIGR01935
      Location:6 → 160
      NOT-MenG; RraA famliy
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q9FFE0.1

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