BZO2H1 bZIP transcription factor family protein [Arabidopsis thaliana (thale cress)] - Gene

Summary

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Official Symbol: BZO2H1
Official Full Name: bZIP transcription factor family protein
Primary source: TAIR:AT4G02640
Locus tag: AT4G02640
See related: Araport:AT4G02640
Gene type: protein coding
RefSeq status: REVIEWED
Organism: Arabidopsis thaliana (ecotype: Columbia)
Lineage: Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
Also known as: Arabidopsis thaliana basic leucine zipper 10; ATBZIP10
Summary: Encodes a basic leucine zipper (bZIP) transcription factor AtbZIP10. AtbZIP10 shuttles between the nucleus and the cytoplasm. It binds consensus G- and C-box DNA sequences. AtbZIP10 acts antagonistically with LSD1 in both pathogen-induced hypersensitive response and basal defense responses.
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Genomic context

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See BZO2H1 in Genome Data Viewer

Location:: chromosome: 4

Exon count:: 6

Sequence:: Chromosome: 4; NC_003075.7 (1153945..1156356)

Chromosome 4 - NC_003075.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Go to reference sequence details

Genomic Sequence:: NC_003075.7

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Data show that AtbZIP1 can bind ACGT-based motifs in vitro and that the binding characteristics appear to be affected by the heterodimerization between AtbZIP1 and the C-group AtbZIPs, including AtbZIP10 and AtbZIP63.
Title: The arabidopsis bZIP1 transcription factor is involved in sugar signaling, protein networking, and DNA binding.

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Interactions

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Products	Interactant	Other Gene	Complex	Source	Pubs	Description

General gene information

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Homology

Orthologs from OrthoDB

NM_116498.4

Supported by ESTs:

NM_178959.3

Supported by ESTs:

Gene Ontology Provided by TAIR

Function	Evidence Code	Pubs
enables DNA-binding transcription factor activity	IDA Inferred from Direct Assay more info	PubMed
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity	ISS Inferred from Sequence or Structural Similarity more info	PubMed
enables protein binding	IPI Inferred from Physical Interaction more info	PubMed
enables protein heterodimerization activity	IPI Inferred from Physical Interaction more info	PubMed
enables sequence-specific DNA binding	IDA Inferred from Direct Assay more info	PubMed
enables transcription cis-regulatory region binding	IPI Inferred from Physical Interaction more info	PubMed

Process	Evidence Code	Pubs
acts_upstream_of_or_within plant-type hypersensitive response	IMP Inferred from Mutant Phenotype more info	PubMed
involved_in positive regulation of DNA-templated transcription	IDA Inferred from Direct Assay more info	PubMed
involved_in positive regulation of seed maturation	IDA Inferred from Direct Assay more info	PubMed
involved_in regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within response to molecule of oomycetes origin	IMP Inferred from Mutant Phenotype more info	PubMed

Component	Evidence Code	Pubs
located_in cytoplasm	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	IDA Inferred from Direct Assay more info	PubMed
located_in nucleus	ISM Inferred from Sequence Model more info

General protein information

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Preferred Names: bZIP transcription factor family protein

NP_192173.1

BZO2H1; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), Basic leucine-zipper, C-terminal (InterPro:IPR020983); BEST Arabidopsis thaliana protein match is: basic leucine zipper 25 (TAIR:AT3G54620.1); Has 2464 Blast hits to 2453 proteins in 235 species: Archae - 2; Bacteria - 9; Metazoa - 253; Fungi - 131; Plants - 1940; Viruses - 0; Other Eukaryotes - 129 (source: NCBI BLink).

NP_849290.1

BZO2H1; CONTAINS InterPro DOMAIN/s: Basic-leucine zipper (bZIP) transcription factor (InterPro:IPR004827), bZIP transcription factor, bZIP-1 (InterPro:IPR011616), Basic leucine-zipper, C-terminal (InterPro:IPR020983); BEST Arabidopsis thaliana protein match is: basic leucine zipper 25 (TAIR:AT3G54620.1); Has 2459 Blast hits to 2451 proteins in 233 species: Archae - 2; Bacteria - 3; Metazoa - 274; Fungi - 129; Plants - 1935; Viruses - 0; Other Eukaryotes - 116 (source: NCBI BLink).

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

NC_003075.7 Reference assembly

Range

1153945..1156356

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GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

NM_001340389.1 → NP_001329302.1 bZIP transcription factor family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V424, A0A1P8B7A6
NM_001340390.1 → NP_001329303.1 bZIP transcription factor family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V424
NM_116498.4 → NP_192173.1 bZIP transcription factor family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/Swiss-Prot

C0Z2B4, O22763, Q8RXJ3, Q9FUD4

UniProtKB/TrEMBL

A0A178V4D9

Conserved Domains (2) summary

pfam12498
Location:284 → 385

bZIP_C; Basic leucine-zipper C terminal

cl21462
Location:214 → 276

bZIP; Basic leucine zipper (bZIP) domain of bZIP transcription factors: a DNA-binding and dimerization domain
NM_178959.3 → NP_849290.1 bZIP transcription factor family protein [Arabidopsis thaliana]

Status: REVIEWED

UniProtKB/TrEMBL

A0A178V4D9, A0A5S9XPC0

Conserved Domains (2) summary

smart00338
Location:220 → 282

BRLZ; basic region leucin zipper

pfam12498
Location:290 → 391

bZIP_C; Basic leucine-zipper C terminal