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    rpsF 30S ribosomal subunit protein S6 [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948723, updated on 3-Dec-2024

    Summary

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    Official Symbol
    rpsF
    Official Full Name
    30S ribosomal subunit protein S6
    Primary source
    ECOCYC:EG10905
    Locus tag
    b4200
    See related
    ASAP:ABE-0013740
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK4196; sdgH
    Summary
    RpsF is modified posttranslationally by RimK, which adds four glutamic acid residues to the RpsF C-terminus. [More information is available at EcoGene: EG10905]. The S6 protein is a component of the 30S subunit of the ribosome. [More information is available at EcoCyc: EG10905].
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    Genomic context

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    Sequence:
    NC_000913.3 (4425118..4425513)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene L-ribulose-5-phosphate 3-epimerase UlaE Neighboring gene L-ribulose-5-phosphate 4-epimerase UlaF Neighboring gene DUF1471 domain-containing protein YjfY Neighboring gene primosomal replication protein N Neighboring gene 30S ribosomal subunit protein S18

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Determination of the complete amino-acid sequence of protein S6 from the wild-type and a mutant of Escherichia coli. Hitz H, et al. Eur J Biochem, 1977 May 16. PMID 328274
    2. [Antisense RNA mediated gene silencing of nonessential gene rpsF in Escherichia coli]. Tang X, et al. Wei Sheng Wu Xue Bao, 2014 Apr 4. PMID 25007658
    3. A new ribosomal protein locus in Escherichia coli: the gene for protein S6 maps at 97 min. Isono K, et al. Mol Gen Genet, 1977 Jun 8. PMID 329109
    4. Post-translational modification of Escherichia coli ribosomal protein S6. Reeh S, et al. Mol Gen Genet, 1979 Jun 7. PMID 386035
    5. Positive control of a global antioxidant defense regulon activated by superoxide-generating agents in Escherichia coli. Greenberg JT, et al. Proc Natl Acad Sci U S A, 1990 Aug. PMID 1696718, Free PMC Article

    See all (52) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. S6 modification is regulated solely via the rate of ribosome biosynthesis at limiting concentration of RimK enzyme.
      Title: Oligoglutamylation of E. coli ribosomal protein S6 is under growth phase control.
    2. Gene silencing of nonessential gene rpsF reduced cell growth.
      Title: [Antisense RNA mediated gene silencing of nonessential gene rpsF in Escherichia coli].
    3. N-terminus verified by Edman degradation on complete protein
      Title: Small genes/gene-products in Escherichia coli K-12.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables mRNA 5'-UTR binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    enables rRNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables small ribosomal subunit rRNA binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables small ribosomal subunit rRNA binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables structural constituent of ribosome IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables structural constituent of ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in cytoplasmic translation NAS
    Non-traceable Author Statement
    more info
    		 PubMed 
    involved_in translation IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytosolic small ribosomal subunit IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytosolic small ribosomal subunit IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytosolic small ribosomal subunit IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    part_of ribonucleoprotein complex IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in ribosome IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    30S ribosomal subunit protein S6

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4425118..4425513
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418621.5 30S ribosomal subunit protein S6 [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418621.5

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAD2ZBD5
      Conserved Domains (1) summary
      PRK00453
      Location:1 → 107
      rpsF; 30S ribosomal protein S6; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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