U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    ychO putative invasin YchO [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945801, updated on 3-Dec-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    ychO
    Official Full Name
    putative invasin YchO
    Primary source
    ECOCYC:EG12405
    Locus tag
    b1220
    See related
    ASAP:ABE-0004095
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1214; ychP
    Summary
    Extension based on homology to S. typhimurium SinH. [More information is available at EcoGene: EG12405].
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Sequence:
    NC_000913.3 (1273784..1275178)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene glutathione-specific gamma-glutamylcyclotransferase Neighboring gene DsrE/F sulfur relay family protein YchN Neighboring gene DNA-binding transcriptional dual regulator NarL Neighboring gene sensor histidine kinase NarX Neighboring gene nitrate:nitrite antiporter NarK Neighboring gene ncRNA

    Genomic regions, transcripts, and products

    Go to the top of the page Help
    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Structure of genes narL and narX of the nar (nitrate reductase) locus in Escherichia coli K-12. Stewart V, et al. J Bacteriol, 1989 Apr. PMID 2649492, Free PMC Article
    2. The narX and narL genes encoding the nitrate-sensing regulators of Escherichia coli are homologous to a family of prokaryotic two-component regulatory genes. Nohno T, et al. Nucleic Acids Res, 1989 Apr 25. PMID 2657652, Free PMC Article
    3. Systematic Localization of Escherichia coli Membrane Proteins. Sueki A, et al. mSystems, 2020 Mar 3. PMID 32127419, Free PMC Article
    4. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article
    5. The virulence factor ychO has a pleiotropic action in an Avian Pathogenic Escherichia coli (APEC) strain. Pilatti L, et al. BMC Microbiol, 2016 Mar 10. PMID 26965678, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. YchO plays a essential role in the pathogenicity.
      Title: The virulence factor ychO has a pleiotropic action in an Avian Pathogenic Escherichia coli (APEC) strain.
    Submit: New GeneRIF Correction

    General gene information

    Go to the top of the page Help

    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in cell outer membrane HDA PubMed 
    is_active_in cell outer membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in periplasmic space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

    Go to the top of the page Help
    Preferred Names
    putative invasin YchO

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1273784..1275178
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415738.2 putative invasin YchO [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415738.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6N8NB90, A0A8S7CSC7
      Conserved Domains (1) summary
      PRK10177
      Location:1 → 464
      PRK10177; YchO/YchP family invasin
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.