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    rsmB 16S rRNA m(5)C967 methyltransferase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947789, updated on 17-Dec-2024

    Summary

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    Official Symbol
    rsmB
    Official Full Name
    16S rRNA m(5)C967 methyltransferase
    Primary source
    ECOCYC:EG12163
    Locus tag
    b3289
    See related
    ASAP:ABE-0010785
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3275; fmu; fmv; rrmB; sun; yhdB
    Summary
    RsmB is the methyltransferase responsible for methylation of 16S rRNA at the C967 nucleotide . [More information is available at EcoCyc: EG12163].
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    Genomic context

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    Sequence:
    NC_000913.3 (3435207..3436496)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene peptide deformylase Neighboring gene 10-formyltetrahydrofolate:L-methionyl-tRNA(fMet) N-formyltransferase Neighboring gene NAD-binding component of Trk potassium transporters Neighboring gene large conductance mechanosensitive channel Neighboring gene alternative ribosome-rescue factor A

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The first structure of an RNA m5C methyltransferase, Fmu, provides insight into catalytic mechanism and specific binding of RNA substrate. Foster PG, et al. Structure, 2003 Dec. PMID 14656444
    2. m5C RNA and m5C DNA methyl transferases use different cysteine residues as catalysts. Liu Y, et al. Proc Natl Acad Sci U S A, 2000 Jul 18. PMID 10899996, Free PMC Article
    3. RNA:(guanine-N2) methyltransferases RsmC/RsmD and their homologs revisited--bioinformatic analysis and prediction of the active site based on the uncharacterized Mj0882 protein structure. Bujnicki JM, et al. BMC Bioinformatics, 2002 Apr 3. PMID 11929612, Free PMC Article
    4. A survey of polypeptide deformylase function throughout the eubacterial lineage. Mazel D, et al. J Mol Biol, 1997 Mar 14. PMID 9086272
    5. Identification of the 16S rRNA m5C967 methyltransferase from Escherichia coli. Gu XR, et al. Biochemistry, 1999 Mar 30. PMID 10194318

    See all (15) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-terminus verified by Edman degradation on complete protein
      Title: Purification, cloning, and characterization of the 16S RNA m5C967 methyltransferase from Escherichia coli.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables rRNA (cytosine) methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables rRNA (cytosine-C5-)-methyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables rRNA (cytosine-C5-)-methyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables rRNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in rRNA base methylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within rRNA base methylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in rRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in regulation of DNA-templated transcription IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in cytosol IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    16S rRNA m(5)C967 methyltransferase
    NP_417747.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3435207..3436496
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417747.1 16S rRNA m(5)C967 methyltransferase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417747.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376M414
      Conserved Domains (1) summary
      PRK10901
      Location:6 → 428
      PRK10901; 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB
    Nucleotide Protein
    Heading Accession and Version

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