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    abpB putative helicase YfjK [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947111, updated on 3-Dec-2024

    Summary

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    Official Symbol
    abpB
    Official Full Name
    putative helicase YfjK
    Primary source
    ECOCYC:G7362
    Locus tag
    b2627
    See related
    ASAP:ABE-0008648
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2623; yfjK
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    Genomic context

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    Sequence:
    NC_000913.3 (2761351..2763540, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene DUF3987 domain-containing protein YfjI Neighboring gene protein YfjJ Neighboring gene anti-bacteriophage protein Neighboring gene protein YfjM Neighboring gene RNase LS, toxin of the RnlAB toxin-antitoxin system Neighboring gene antitoxin RnlB

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. AbpA and AbpB provide anti-phage activity in Escherichia coli. Yasui R, et al. Genes Genet Syst, 2014. PMID 25224971
    2. Evolution of extreme resistance to ionizing radiation via genetic adaptation of DNA repair. Byrne RT, et al. Elife, 2014 Mar 4. PMID 24596148, Free PMC Article
    3. Directed evolution of ionizing radiation resistance in Escherichia coli. Harris DR, et al. J Bacteriol, 2009 Aug. PMID 19502398, Free PMC Article
    4. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    5. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. AbpA and AbpB target DNA replication of phages to block phage propagation
      Title: AbpA and AbpB provide anti-phage activity in Escherichia coli.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables helicase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables hydrolase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in defense response to virus IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within defense response to virus IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    acts_upstream_of_or_within response to ionizing radiation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative helicase YfjK

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2761351..2763540 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417116.1 putative helicase YfjK [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417116.1

      Status: PROVISIONAL

      UniProtKB/Swiss-Prot
      P52126
      Conserved Domains (1) summary
      COG1204
      Location:68 → 729
      BRR2; Replicative superfamily II helicase [Replication, recombination and repair]
    Nucleotide Protein
    Heading Accession and Version

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