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    cyoD cytochrome bo3 subunit 4 [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 944918, updated on 3-Dec-2024

    Summary

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    Official Symbol
    cyoD
    Official Full Name
    cytochrome bo3 subunit 4
    Primary source
    ECOCYC:EG10181
    Locus tag
    b0429
    See related
    ASAP:ABE-0001487
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0423
    Summary
    CyoD is subunit IV of the cytochrome bo terminal oxidase complex encoded by cyoABCDE. [More information is available at EcoCyc: EG10181].
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    Genomic context

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    Sequence:
    NC_000913.3 (447717..448046, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative transport protein YajR Neighboring gene heme O synthase Neighboring gene cytochrome bo3 subunit 3 Neighboring gene cytochrome bo3 subunit 1 Neighboring gene cytochrome bo3 subunit 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Probing a role of subunit IV of the Escherichia coli bo-type ubiquinol oxidase by deletion and cross-linking analyses. Saiki K, et al. J Biol Chem, 1996 Jun 28. PMID 8663126
    2. Cytochrome o from Escherichia coli is structurally related to cytochrome aa3. Saraste M, et al. Ann N Y Acad Sci, 1988. PMID 2854403
    3. Role of Tyr-288 at the dioxygen reduction site of cytochrome bo studied by stable isotope labeling and resonance raman spectroscopy. Uchida T, et al. J Biol Chem, 2004 Dec 17. PMID 15465820
    4. Terminal oxidases of Escherichia coli aerobic respiratory chain. I. Purification and properties of cytochrome b562-o complex from cells in the early exponential phase of aerobic growth. Kita K, et al. J Biol Chem, 1984 Mar 10. PMID 6365921
    5. Formation of a membrane potential by reconstructed liposomes made with cytochrome b562-o complex, a terminal oxidase of Escherichia coli K12. Kita K, et al. J Biol Chem, 1982 Jul 25. PMID 7045115

    See all (53) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. No evidence of low affinity ubiquinone binding site in cytochrome bo3 from Escherichia coli.
      Title: Searching for the low affinity ubiquinone binding site in cytochrome bo(3) from Escherichia coli.
    Submit: New GeneRIF Correction

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables cytochrome bo3 ubiquinol oxidase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables cytochrome bo3 ubiquinol oxidase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables cytochrome bo3 ubiquinol oxidase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables electron transfer activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables oxidoreductase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables oxidoreduction-driven active transmembrane transporter activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables protein binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables proton transmembrane transporter activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables proton transmembrane transporter activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in aerobic electron transport chain IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within aerobic electron transport chain IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in aerobic electron transport chain IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    acts_upstream_of_or_within aerobic respiration IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within aerobic respiration IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in electron transport coupled proton transport IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within electron transport coupled proton transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in electron transport coupled proton transport IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    involved_in electron transport coupled proton transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    part_of cytochrome o ubiquinol oxidase complex IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    part_of cytochrome o ubiquinol oxidase complex IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    part_of cytochrome o ubiquinol oxidase complex IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane ISM
    Inferred from Sequence Model
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    cytochrome bo3 subunit 4
    NP_414963.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      447717..448046 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_414963.1 cytochrome bo3 subunit 4 [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_414963.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9AE14
      Conserved Domains (1) summary
      PRK10582
      Location:1 → 109
      PRK10582; cytochrome o ubiquinol oxidase subunit IV; Provisional
    Nucleotide Protein
    Heading Accession and Version

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