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    ybbJ NfeD-like family protein YbbJ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945126, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybbJ
    Official Full Name
    NfeD-like family protein YbbJ
    Primary source
    ECOCYC:G6264
    Locus tag
    b0488
    See related
    ASAP:ABE-0001695
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0482
    Summary
    qmcA and ybbJ constitute an operon. [More information is available at EcoGene: EG13257]. YbbJ is an inner membrane protein with three predicted transmembrane domains. [More information is available at EcoCyc: G6264].
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    Genomic context

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    Sequence:
    NC_000913.3 (514401..514859, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative transporter YbaT Neighboring gene DNA-binding transcriptional dual regulator CueR Neighboring gene PHB domain-containing protein QmcA Neighboring gene putative iron ABC exporter ATP-binding subunit FetA Neighboring gene putative iron ABC exporter membrane subunit FetB Neighboring gene chaperedoxin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Eukaryotic and prokaryotic stomatins: the proteolytic link. Green JB, et al. Blood Cells Mol Dis, 2004 May-Jun. PMID 15121101
    2. The Escherichia coli plasma membrane contains two PHB (prohibitin homology) domain protein complexes of opposite orientations. Chiba S, et al. Mol Microbiol, 2006 Apr. PMID 16573693
    3. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    4. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
    5. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    NfeD-like family protein YbbJ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      514401..514859 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415021.2 NfeD-like family protein YbbJ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415021.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      B7MQK6
      Conserved Domains (1) summary
      COG1585
      Location:8 → 150
      YbbJ; Membrane protein implicated in regulation of membrane protease activity [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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