U.S. flag

An official website of the United States government

Links from GEO Profiles

    • Showing Current items.

    Odf4 outer dense fiber of sperm tails 4 [ Rattus norvegicus (Norway rat) ]

    Gene ID: 303236, updated on 9-Dec-2024

    Summary

    Official Symbol
    Odf4provided by RGD
    Official Full Name
    outer dense fiber of sperm tails 4provided by RGD
    Primary source
    RGD:1359332
    See related
    EnsemblRapid:ENSRNOG00000004225 AllianceGenome:RGD:1359332
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Rattus norvegicus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus
    Summary
    Predicted to be involved in cell differentiation and spermatogenesis. Predicted to be located in outer dense fiber. Predicted to be active in plasma membrane. Orthologous to human ODF4 (outer dense fiber of sperm tails 4). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Restricted expression toward (RPKM 167.6) See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Odf4 in Genome Data Viewer
    Location:
    10q24
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCr8 (GCF_036323735.1) 10 NC_086028.1 (54127398..54133227, complement)
    RS_2023_06 previous assembly mRatBN7.2 (GCF_015227675.2) 10 NC_051345.1 (53628592..53634525, complement)
    106 previous assembly Rnor_6.0 (GCF_000001895.5) 10 NC_005109.4 (55510333..55516315, complement)

    Chromosome 10 - NC_086028.1Genomic Context describing neighboring genes Neighboring gene ribosomal protein L26 Neighboring gene U6 spliceosomal RNA Neighboring gene ribosomal protein S4, X-linked, pseudogene 7 Neighboring gene Rho guanine nucleotide exchange factor 15 Neighboring gene uncharacterized LOC134480814

    Genomic regions, transcripts, and products

    Expression

    • Project title: A rat RNA-Seq transcriptomic BodyMap across 11 organs and 4 developmental stages
    • Description: 320 RNA samples isolated from 11 organs (adrenal gland, brain, heart, kidney, liver, lung, muscle, spleen, thymus, and testes or uterus) from both sexes of Fischer 344 rats across four developmental stages (2-, 6-, 21-, and 104-weeks-old)
    • BioProject: PRJNA238328
    • Publication: PMID 24510058
    • Analysis date: Mon Jun 6 17:44:12 2016

    General gene information

    Clone Names

    • MGC94483

    Gene Ontology Provided by RGD

    Process Evidence Code Pubs
    involved_in cell differentiation  
    involved_in spermatogenesis  
    Component Evidence Code Pubs
    located_in membrane  
    located_in motile cilium  
    located_in outer dense fiber  
    located_in outer dense fiber  
    is_active_in plasma membrane  

    General protein information

    Preferred Names
    outer dense fiber protein 4
    Names
    OPPO 1
    outer dense fiber of sperm tails protein 4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001007670.1NP_001007671.1  outer dense fiber protein 4

      See identical proteins and their annotated locations for NP_001007671.1

      Status: PROVISIONAL

      Source sequence(s)
      BC079319
      UniProtKB/Swiss-Prot
      Q6AXT9

    RefSeqs of Annotated Genomes: GCF_036323735.1-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCr8

    Genomic

    1. NC_086028.1 Reference GRCr8

      Range
      54127398..54133227 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_063269024.1XP_063125094.1  outer dense fiber protein 4 isoform X4

    2. XM_063269025.1XP_063125095.1  outer dense fiber protein 4 isoform X5

    3. XM_017597282.3XP_017452771.1  outer dense fiber protein 4 isoform X3

    4. XM_017597281.3XP_017452770.1  outer dense fiber protein 4 isoform X2

    5. XM_006246698.5XP_006246760.1  outer dense fiber protein 4 isoform X1

      UniProtKB/TrEMBL
      A0A8L2Q2Z7
      Related
      ENSRNOP00000005667.5, ENSRNOT00000005667.6

    RNA

    1. XR_010055180.1 RNA Sequence

    2. XR_005489818.2 RNA Sequence

    3. XR_005489819.2 RNA Sequence

    4. XR_010055179.1 RNA Sequence

    External link. Please review our privacy policy.