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    napF ferredoxin-type protein [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946813, updated on 3-Dec-2024

    Summary

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    Official Symbol
    napF
    Official Full Name
    ferredoxin-type protein
    Primary source
    ECOCYC:EG12068
    Locus tag
    b2208
    See related
    ASAP:ABE-0007293
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2200; yojG
    Summary
    NapF is located in the cytoplasm and physically interacts with NapA (Nilavongse, 2006). [More information is available at EcoGene: EG12068]. The napF gene encodes a predicted 3Fe-4S iron sulfur protein. [More information is available at EcoCyc: EG12068].
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    Genomic context

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    Sequence:
    NC_000913.3 (2303003..2303497, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene ferredoxin-type protein NapH Neighboring gene ferredoxin-type protein NapG Neighboring gene periplasmic nitrate reductase subunit NapA Neighboring gene NapA signal peptide-binding chaperone NapD Neighboring gene uncharacterized protein YojO Neighboring gene serine protease inhibitor ecotin

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Catabolite repression control of napF (periplasmic nitrate reductase) operon expression in Escherichia coli K-12. Stewart V, et al. J Bacteriol, 2009 Feb. PMID 19060147, Free PMC Article
    2. Dual overlapping promoters control napF (periplasmic nitrate reductase) operon expression in Escherichia coli K-12. Stewart V, et al. J Bacteriol, 2003 Oct. PMID 13129959, Free PMC Article
    3. The napF and narG nitrate reductase operons in Escherichia coli are differentially expressed in response to submicromolar concentrations of nitrate but not nitrite. Wang H, et al. J Bacteriol, 1999 Sep. PMID 10464201, Free PMC Article
    4. Sequence-specific binding to a subset of IscR-regulated promoters does not require IscR Fe-S cluster ligation. Nesbit AD, et al. J Mol Biol, 2009 Mar 20. PMID 19361432, Free PMC Article
    5. Substitutions at auxiliary operator O3 enhance repression by nitrate-responsive regulator NarL at synthetic lac control regions in Escherichia coli K-12. Stewart V, et al. J Bacteriol, 2008 Jan. PMID 17965164, Free PMC Article

    See all (24) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 4 iron, 4 sulfur cluster binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within response to oxidative stress IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    is_active_in cytoplasm IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cytoplasm IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    ferredoxin-type protein

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2303003..2303497 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416712.1 ferredoxin-type protein [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416712.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A2W6P4F5
      Conserved Domains (1) summary
      PRK10194
      Location:2 → 164
      PRK10194; ferredoxin-type protein NapF
    Nucleotide Protein
    Heading Accession and Version

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