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    ygbE DUF3561 domain-containing inner membrane protein YgbE [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947268, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ygbE
    Official Full Name
    DUF3561 domain-containing inner membrane protein YgbE
    Primary source
    ECOCYC:EG12707
    Locus tag
    b2749
    See related
    ASAP:ABE-0009021
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2744
    Summary
    YgbE is an inner membrane protein with three predicted transmembrane domains. [More information is available at EcoCyc: EG12707].
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    Genomic context

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    Sequence:
    NC_000913.3 (2873014..2873337, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase Neighboring gene 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Neighboring gene cell division protein FtsB Neighboring gene adenylyl-sulfate kinase Neighboring gene sulfate adenylyltransferase subunit 1 Neighboring gene sulfate adenylyltransferase subunit 2

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The DNA sequence of the sulfate activation locus from Escherichia coli K-12. Leyh TS, et al. J Biol Chem, 1992 May 25. PMID 1316900
    2. Detection of new genes in a bacterial genome using Markov models for three gene classes. Borodovsky M, et al. Nucleic Acids Res, 1995 Sep 11. PMID 7567469, Free PMC Article
    3. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    4. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DUF3561 domain-containing inner membrane protein YgbE

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2873014..2873337 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417229.1 DUF3561 domain-containing inner membrane protein YgbE [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417229.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6D0IDU4
      Conserved Domains (1) summary
      pfam12084
      Location:1 → 107
      DUF3561; Protein of unknown function (DUF3561)
    Nucleotide Protein
    Heading Accession and Version

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