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    astC succinylornithine transaminase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946255, updated on 3-Dec-2024

    Summary

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    Official Symbol
    astC
    Official Full Name
    succinylornithine transaminase
    Primary source
    ECOCYC:G6944
    Locus tag
    b1748
    See related
    ASAP:ABE-0005824
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    argM; cstC; ECK1746; ydjW
    Summary
    The astC gene product is 60% identical to the argD gene product. [More information is available at EcoCyc: G6944].
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    Genomic context

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    Sequence:
    NC_000913.3 (1830762..1831982, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene succinylglutamate desuccinylase Neighboring gene N-succinylarginine dihydrolase Neighboring gene aldehyde dehydrogenase Neighboring gene arginine N-succinyltransferase Neighboring gene exodeoxyribonuclease III Neighboring gene DedA family protein YdjX

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Biosynthesis and metabolism of arginine in bacteria. Cunin R, et al. Microbiol Rev, 1986 Sep. PMID 3534538, Free PMC Article
    2. Phenotype microarrays for high-throughput phenotypic testing and assay of gene function. Bochner BR, et al. Genome Res, 2001 Jul. PMID 11435407, Free PMC Article
    3. The Escherichia coli starvation gene cstC is involved in amino acid catabolism. Fraley CD, et al. J Bacteriol, 1998 Aug. PMID 9696780, Free PMC Article
    4. The redundant aminotransferases in lysine and arginine synthesis and the extent of aminotransferase redundancy in Escherichia coli. Lal PB, et al. Mol Microbiol, 2014 Nov. PMID 25243376
    5. The SWISS-PROT protein sequence data bank, recent developments. Bairoch A, et al. Nucleic Acids Res, 1993 Jul 1. PMID 8332529, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables identical protein binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables pyridoxal phosphate binding IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables succinylornithine transaminase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables succinylornithine transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables transaminase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in L-arginine biosynthetic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within arginine biosynthetic process via ornithine IGI
    Inferred from Genetic Interaction
    more info
    		 PubMed 
    involved_in arginine catabolic process IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in arginine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within arginine catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in arginine catabolic process to glutamate IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in arginine catabolic process to succinate IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within arginine catabolic process to succinate IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in arginine metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in ornithine catabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within ornithine catabolic process IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    succinylornithine transaminase
    NP_416262.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1830762..1831982 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416262.1 succinylornithine transaminase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416262.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376K044, A0A8S7HY38
      Conserved Domains (1) summary
      PRK12381
      Location:1 → 406
      PRK12381; bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
    Nucleotide Protein
    Heading Accession and Version

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