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    rsmF 16S rRNA m(5)C1407 methyltransferase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946348, updated on 3-Dec-2024

    Summary

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    Official Symbol
    rsmF
    Official Full Name
    16S rRNA m(5)C1407 methyltransferase
    Primary source
    ECOCYC:G7008
    Locus tag
    b1835
    See related
    ASAP:ABE-0006106
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1834; yebU
    Summary
    RsmF is the methyltransferase responsible for methylation of 16S rRNA at the C5 position of the C1407 nucleotide. [More information is available at EcoCyc: G7008].
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    Genomic context

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    Sequence:
    NC_000913.3 (1920223..1921662)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene free methionine-(R)-sulfoxide reductase Neighboring gene intermembrane transport protein LetA Neighboring gene lipophilic envelope spanning tunnel Neighboring gene DUF1480 domain-containing protein YebV Neighboring gene DUF1482 domain-containing protein YebW

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The aminoglycoside resistance methyltransferase Sgm impedes RsmF methylation at an adjacent rRNA nucleotide in the ribosomal A site. Cubrilo S, et al. RNA, 2009 Aug. PMID 19509304, Free PMC Article
    2. Exposition of a family of RNA m(5)C methyltransferases from searching genomic and proteomic sequences. Reid R, et al. Nucleic Acids Res, 1999 Aug 1. PMID 10454610, Free PMC Article
    3. Role of 16S ribosomal RNA methylations in translation initiation in Escherichia coli. Das G, et al. EMBO J, 2008 Mar 19. PMID 18288206, Free PMC Article
    4. Thermofluor-based high-throughput stability optimization of proteins for structural studies. Ericsson UB, et al. Anal Biochem, 2006 Oct 15. PMID 16962548
    5. The structure of the RNA m5C methyltransferase YebU from Escherichia coli reveals a C-terminal RNA-recruiting PUA domain. Hallberg BM, et al. J Mol Biol, 2006 Jul 21. PMID 16793063

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables rRNA (cytosine) methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables rRNA (cytosine-C5-)-methyltransferase activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables rRNA (cytosine-C5-)-methyltransferase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables rRNA methyltransferase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in RNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in RNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in rRNA base methylation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    acts_upstream_of_or_within rRNA base methylation IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    involved_in rRNA methylation IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in rRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    16S rRNA m(5)C1407 methyltransferase
    NP_416349.2

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1920223..1921662
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416349.2 16S rRNA m(5)C1407 methyltransferase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416349.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A8S7IDD4
      Conserved Domains (1) summary
      PRK11933
      Location:6 → 474
      yebU; rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
    Nucleotide Protein
    Heading Accession and Version

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