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    ycdY chaperone protein YcdY [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945609, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ycdY
    Official Full Name
    chaperone protein YcdY
    Primary source
    ECOCYC:G6541
    Locus tag
    b1035
    See related
    ASAP:ABE-0003511
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1021
    Summary
    torD, dmsD and ycdY are paralogs. [More information is available at EcoGene: EG13871].
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    Genomic context

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    Sequence:
    NC_000913.3 (1099640..1100194)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene glyoxylate/hydroxypyruvate reductase A Neighboring gene zinc-binding phosphatase YcdX Neighboring gene inner membrane protein YcdZ Neighboring gene curli secretion channel

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of a twin-arginine leader-binding protein. Oresnik IJ, et al. Mol Microbiol, 2001 Apr. PMID 11309116
    2. Functional and structural analysis of members of the TorD family, a large chaperone family dedicated to molybdoproteins. Ilbert M, et al. Microbiology (Reading), 2004 Apr. PMID 15073303
    3. Coordinating assembly and export of complex bacterial proteins. Jack RL, et al. EMBO J, 2004 Oct 13. PMID 15385959, Free PMC Article
    4. YcdY protein of Escherichia coli, an atypical member of the TorD chaperone family. Redelberger D, et al. J Bacteriol, 2011 Dec. PMID 21965574, Free PMC Article
    5. Differential Interactions between Tat-specific redox enzyme peptides and their chaperones. Chan CS, et al. J Bacteriol, 2009 Apr. PMID 19151138, Free PMC Article

    See all (12) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. YcdY is the chaperone of YcdX, a zinc protein involved in the swarming motility process.
      Title: YcdY protein of Escherichia coli, an atypical member of the TorD chaperone family.
    Submit: New GeneRIF Correction

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    acts_upstream_of_or_within DNA damage response IEP
    Inferred from Expression Pattern
    more info
    		 PubMed 
    acts_upstream_of_or_within bacterial-type flagellum-dependent swarming motility IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytosol IDA
    Inferred from Direct Assay
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    chaperone protein YcdY

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1099640..1100194
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415553.1 chaperone protein YcdY [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415553.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A3L5H563, A0A6C9QCN1
      Conserved Domains (1) summary
      COG3381
      Location:1 → 184
      TorD; Cytoplasmic chaperone TorD involved in molybdoenzyme TorA maturation [Posttranslational modification, protein turnover, chaperones]
    Nucleotide Protein
    Heading Accession and Version

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