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    ydgK DUF2569 domain-containing inner membrane protein YdgK [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946154, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydgK
    Official Full Name
    DUF2569 domain-containing inner membrane protein YdgK
    Primary source
    ECOCYC:G6870
    Locus tag
    b1626
    See related
    ASAP:ABE-0005447
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1622; rsxP
    Summary
    ydgK transcripts readthrough into the rsxABCDGEnth operon (Gifford, 2000). [More information is available at EcoGene: EG13932]. YdgK is an inner membrane protein with four predicted transmembrane domains. [More information is available at EcoCyc: G6870].
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    Genomic context

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    Sequence:
    NC_000913.3 (1705250..1705690)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene beta-lactam resistance protein Neighboring gene H-NS- and StpA-binding protein Neighboring gene SoxR [2Fe-2S] reducing system protein RsxA Neighboring gene SoxR [2Fe-2S] reducing system protein RsxB Neighboring gene SoxR [2Fe-2S] reducing system protein RsxC

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The genes encoding endonuclease VIII and endonuclease III in Escherichia coli are transcribed as the terminal genes in operons. Gifford CM, et al. Nucleic Acids Res, 2000 Feb 1. PMID 10637328, Free PMC Article
    2. Cell-free complements in vivo expression of the E. coli membrane proteome. Savage DF, et al. Protein Sci, 2007 May. PMID 17456747, Free PMC Article
    3. Experimentally constrained topology models for 51,208 bacterial inner membrane proteins. Granseth E, et al. J Mol Biol, 2005 Sep 23. PMID 16120447
    4. A reducing system of the superoxide sensor SoxR in Escherichia coli. Koo MS, et al. EMBO J, 2003 Jun 2. PMID 12773378, Free PMC Article
    5. Global topology analysis of the Escherichia coli inner membrane proteome. Daley DO, et al. Science, 2005 May 27. PMID 15919996

    See all (10) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    DUF2569 domain-containing inner membrane protein YdgK

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1705250..1705690
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416143.2 DUF2569 domain-containing inner membrane protein YdgK [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416143.2

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9AIL0
      Conserved Domains (1) summary
      pfam10754
      Location:7 → 144
      DUF2569; Protein of unknown function (DUF2569)
    Nucleotide Protein
    Heading Accession and Version

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