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    ybgD putative fimbrial protein YbgD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945325, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ybgD
    Official Full Name
    putative fimbrial protein YbgD
    Primary source
    ECOCYC:EG12359
    Locus tag
    b0719
    See related
    ASAP:ABE-0002448
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0708
    Summary
    One of 25 FimA homologs in EcoGene. [More information is available at EcoGene: EG12359].
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    Genomic context

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    Sequence:
    NC_000913.3 (752229..752795, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative fimbrial protein YbgO Neighboring gene putative fimbrial chaperone YbgP Neighboring gene putative fimbrial usher protein YbgQ Neighboring gene citrate synthase Neighboring gene protein YbgV Neighboring gene protein YbgU

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Escherichia coli K-12 possesses multiple cryptic but functional chaperone-usher fimbriae with distinct surface specificities. Korea CG, et al. Environ Microbiol, 2010 Jul. PMID 20345943
    2. Intrinsic and extrinsic approaches for detecting genes in a bacterial genome. Borodovsky M, et al. Nucleic Acids Res, 1994 Nov 11. PMID 7984428, Free PMC Article
    3. Global analysis of candidate genes important for fitness in a competitive biofilm using DNA-array-based transposon mapping. Junker LM, et al. Microbiology (Reading), 2006 Aug. PMID 16849790
    4. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
    5. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article

    See all (7) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in cell adhesion IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in cell adhesion involved in single-species biofilm formation IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    Component Evidence Code Pubs
    is_active_in pilus IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in pilus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in pilus RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    putative fimbrial protein YbgD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      752229..752795 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415247.1 putative fimbrial protein YbgD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415247.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A377DVD4
      Conserved Domains (1) summary
      COG3539
      Location:2 → 188
      FimA; Pilin (type 1 fimbria component protein) [Cell motility]
    Nucleotide Protein
    Heading Accession and Version

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