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    yibQ divergent polysaccharide deacetylase domain-containing protein YibQ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948128, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yibQ
    Official Full Name
    divergent polysaccharide deacetylase domain-containing protein YibQ
    Primary source
    ECOCYC:EG12298
    Locus tag
    b3614
    See related
    ASAP:ABE-0011824
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3604
    Summary
    Based on sequence similarity, YibQ is predicted to be a nucleoside (IDP) diphosphatase . [More information is available at EcoCyc: EG12298].
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    Genomic context

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    Sequence:
    NC_000913.3 (3788101..3789060)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 2,3-bisphosphoglycerate-independent phosphoglycerate mutase Neighboring gene murein hydrolase activator EnvC Neighboring gene UDP-glucuronate:LPS(HepIII) glycosyltransferase Neighboring gene threonine dehydrogenase Neighboring gene 2-amino-3-ketobutyrate CoA ligase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. An expanded genome-scale model of Escherichia coli K-12 (iJR904 GSM/GPR). Reed JL, et al. Genome Biol, 2003. PMID 12952533, Free PMC Article
    2. Analysis of the Escherichia coli genome. V. DNA sequence of the region from 76.0 to 81.5 minutes. Sofia HJ, et al. Nucleic Acids Res, 1994 Jul 11. PMID 8041620, Free PMC Article
    3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in carbohydrate metabolic process IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    divergent polysaccharide deacetylase domain-containing protein YibQ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3788101..3789060
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418071.4 divergent polysaccharide deacetylase domain-containing protein YibQ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418071.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A828PBN8
      Conserved Domains (1) summary
      COG2861
      Location:19 → 242
      YibQ; Uncharacterized conserved protein YibQ, putative polysaccharide deacetylase 2 family [Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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