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    ygeX 2,3-diaminopropionate ammonia-lyase [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947012, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ygeX
    Official Full Name
    2,3-diaminopropionate ammonia-lyase
    Primary source
    ECOCYC:G7490
    Locus tag
    b2871
    See related
    ASAP:ABE-0009428
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2867
    Summary
    The N-terminus of the overexpressed protein has been sequenced, but the natural RBS was not used so it is not a Verified protein. the initial Met is cleaved. [More information is available at EcoGene: EG13054]. The ygeX gene encodes 2,3-diaminopropionate ammonia-lyase. [More information is available at EcoCyc: G7490].
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    Genomic context

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    Sequence:
    NC_000913.3 (3007510..3008706)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative sigma(54)-dependent transcriptional regulator YgeV Neighboring gene putative carbamoyltransferase YgeW Neighboring gene putative peptidase YgeY Neighboring gene phenylhydantoinase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Cloning, expression, and sequence analysis of diaminopropionate ammonia lyase gene from a nonvirulent Salmonella typhimurium PU011. Rupesh KR, et al. Appl Biochem Biotechnol, 2007 May-Jun. PMID 18025549
    2. Crystallization and preliminary X-ray diffraction studies on recombinant diaminopropionate ammonia lyase from Escherichia coli. Rajaram V, et al. Acta Crystallogr D Biol Crystallogr, 2003 Sep. PMID 12925808
    3. Characterization of recombinant diaminopropionate ammonia-lyase from Escherichia coli and Salmonella typhimurium. Khan F, et al. Biochem Biophys Res Commun, 2003 Jul 11. PMID 12821154
    4. Production of diamino propionic acid ammonia lyase by a new strain of Salmonella typhimurium PU011. Rupesh KR, et al. BMC Microbiol, 2002 Mar 15. PMID 11914133, Free PMC Article
    5. Diaminopropionate ammonia-lyase from Salmonella typhimurium. Purification and characterization of the crystalline enzyme, and sequence determination of the pyridoxal 5'-phosphate binding peptide. Nagasawa T, et al. J Biol Chem, 1988 Jan 15. PMID 3275662

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables diaminopropionate ammonia-lyase activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables diaminopropionate ammonia-lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables diaminopropionate ammonia-lyase activity IMP
    Inferred from Mutant Phenotype
    more info
    		 PubMed 
    enables lyase activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables protein homodimerization activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables pyridoxal phosphate binding IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    2,3-diaminopropionate ammonia-lyase
    NP_417347.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      3007510..3008706
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417347.1 2,3-diaminopropionate ammonia-lyase [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417347.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9AQJ8, A0A793HIF4
      Conserved Domains (1) summary
      TIGR03528
      Location:5 → 392
      2_3_DAP_am_ly; diaminopropionate ammonia-lyase
    Nucleotide Protein
    Heading Accession and Version

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