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    LINC01522 long intergenic non-protein coding RNA 1522 [ Homo sapiens (human) ]

    Gene ID: 101927457, updated on 10-Dec-2024

    Summary

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    Official Symbol
    LINC01522provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 1522provided by HGNC
    Primary source
    HGNC:HGNC:51224
    See related
    AllianceGenome:HGNC:51224
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward testis (RPKM 1.9) See more
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    Genomic context

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    See LINC01522 in Genome Data Viewer
    Location:
    20q13.13
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (47980093..47990117, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (49748416..49758435, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (46608837..46618861, complement)

    Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene RNA, U7 small nuclear 92 pseudogene Neighboring gene uncharacterized LOC105372637 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr20:46579981-46580540 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46581153-46581653 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46598923-46599424 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46599425-46599924 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 12982 Neighboring gene OCT4-NANOG-H3K4me1 hESC enhancer GRCh37_chr20:46607945-46608919 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46611853-46612352 Neighboring gene uncharacterized LOC107985436 Neighboring gene long intergenic non-protein coding RNA 1523 Neighboring gene H3K27ac hESC enhancer GRCh37_chr20:46621816-46622316 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18011 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18012 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46634734-46635234 Neighboring gene uncharacterized LOC107985437 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46648566-46649066 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr20:46649067-46649567 Neighboring gene uncharacterized LOC105372639 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 18013 Neighboring gene uncharacterized LOC124904923 Neighboring gene Neanderthal introgressed variant-containing enhancer experimental_60555

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. Kimura K, et al. Genome Res, 2006 Jan. PMID 16344560, Free PMC Article
    2. Normalization and subtraction: two approaches to facilitate gene discovery. Bonaldo MF, et al. Genome Res, 1996 Sep. PMID 8889548

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_110027.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      CB240736, DB088024, HY050016

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

      Range
      47980093..47990117 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060944.1 Alternate T2T-CHM13v2.0

      Range
      49748416..49758435 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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