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    ydcF DUF218 domain-containing protein YdcF [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946215, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydcF
    Official Full Name
    DUF218 domain-containing protein YdcF
    Primary source
    ECOCYC:EG12110
    Locus tag
    b1414
    See related
    ASAP:ABE-0004722
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1407
    Summary
    ydcF and ycbC (COG1434) and sanA and yjgQ (COG2949) are four members of the DUF218 superfamily (PF02698). [More information is available at EcoGene: EG12110]. The function of YdcF is unknown. [More information is available at EcoCyc: EG12110].
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    Genomic context

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    Sequence:
    NC_000913.3 (1487235..1488035)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene FMN dependent NADH:quinone oxidoreductase Neighboring gene ATP-dependent 3'->5' RNA helicase HrpA Neighboring gene aldehyde dehydrogenase A Neighboring gene pseudo

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The Escherichia coli YdcF binds S-adenosyl-L-methionine and adopts an alpha/beta-fold characteristic of nucleotide-utilizing enzymes. Chao KL, et al. Proteins, 2008 Jul. PMID 18393394
    2. Genome-wide analyses revealing a signaling network of the RcsC-YojN-RcsB phosphorelay system in Escherichia coli. Hagiwara D, et al. J Bacteriol, 2003 Oct. PMID 13129944, Free PMC Article
    3. Enrichment of low abundance proteins of Escherichia coli by hydroxyapatite chromatography. Fountoulakis M, et al. Electrophoresis, 1999 Aug. PMID 10493123
    4. Large-scale identification of protein-protein interaction of Escherichia coli K-12. Arifuzzaman M, et al. Genome Res, 2006 May. PMID 16606699, Free PMC Article
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (9) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    is_active_in plasma membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  

    General protein information

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    Preferred Names
    DUF218 domain-containing protein YdcF

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1487235..1488035
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415932.1 DUF218 domain-containing protein YdcF [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415932.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A377CUJ4, A0A8S7EH81
      Conserved Domains (1) summary
      COG1434
      Location:1 → 229
      YdcF; Uncharacterized SAM-binding protein YcdF, DUF218 family [General function prediction only]
    Nucleotide Protein
    Heading Accession and Version

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