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    LOC101928004 uncharacterized LOC101928004 [ Homo sapiens (human) ]

    Gene ID: 101928004, updated on 10-Dec-2024

    Summary

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    Gene symbol
    LOC101928004
    Gene description
    uncharacterized LOC101928004
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Biased expression in kidney (RPKM 1.1), bone marrow (RPKM 0.6) and 9 other tissues See more
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    Genomic context

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    See LOC101928004 in Genome Data Viewer
    Location:
    6p25.1
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (6694792..6801171, complement)
    RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (6564024..6670403, complement)
    RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (6695025..6801404, complement)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene LY86 antisense RNA 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23919 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23920 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23921 Neighboring gene calponin 3 pseudogene 1 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23922 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23923 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23924 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23925 Neighboring gene ReSE screen-validated silencer GRCh37_chr6:6654090-6654280 Neighboring gene lymphocyte antigen 86 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:6674525-6675024 Neighboring gene NANOG-H3K4me1 hESC enhancer GRCh37_chr6:6694456-6695405 Neighboring gene uncharacterized LOC101928047 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:6712197-6712986 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23927 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:6725016-6725709 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:6750245-6750862 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr6:6751483-6752100 Neighboring gene uncharacterized LOC105374901 Neighboring gene uncharacterized LOC124901254 Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:6803278-6804477 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr6:6811111-6812310 Neighboring gene basic transcription factor 3 pseudogene 7 Neighboring gene Sharpr-MPRA regulatory region 12260 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr6:6856889-6858088 Neighboring gene uncharacterized LOC105374903 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr6:6887337-6887972 Neighboring gene long intergenic non-protein coding RNA 3055 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 23932 Neighboring gene RNA, 7SL, cytoplasmic 554, pseudogene

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: Tissue-specific circular RNA induction during human fetal development
    • Description: 35 human fetal samples from 6 tissues (3 - 7 replicates per tissue) collected between 10 and 20 weeks gestational time were sequenced using Illumina TruSeq Stranded Total RNA
    • BioProject: PRJNA270632
    • Publication: PMID 26076956
    • Analysis date: Mon Apr 2 22:54:59 2018

    Bibliography

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    Related articles in PubMed

    1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_187687.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AL031123, AL391535

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      6694792..6801171 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      6564024..6670403 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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