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    ybiR putative transporter YbiR [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945438, updated on 17-Dec-2024

    Summary

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    Official Symbol
    ybiR
    Official Full Name
    putative transporter YbiR
    Primary source
    ECOCYC:G6421
    Locus tag
    b0818
    See related
    ASAP:ABE-0002795
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0808
    Summary
    IT (Ion Transporter) superfamily (Prakash, 2003). [More information is available at EcoGene: EG13323]. Expression of ybiR was reduced in response to cold shock . [More information is available at EcoCyc: G6421].
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    Genomic context

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    Sequence:
    NC_000913.3 (853647..854765)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene phosphoethanolamine transferase OpgE Neighboring gene ncRNA Neighboring gene small protein MntS Neighboring gene DNA-binding transcriptional dual regulator MntR Neighboring gene L,D-transpeptidase LdtB Neighboring gene putative ATP-binding protein YbiT

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome-wide transcriptional analysis of the cold shock response in wild-type and cold-sensitive, quadruple-csp-deletion strains of Escherichia coli. Phadtare S, et al. J Bacteriol, 2004 Oct. PMID 15466053, Free PMC Article
    2. Domain structure and pore loops in the 2-hydroxycarboxylate transporter family. Lolkema JS. J Mol Microbiol Biotechnol, 2006. PMID 17114896
    3. Sequence and hydropathy profile analysis of two classes of secondary transporters. Lolkema JS, et al. Mol Membr Biol, 2005 May-Jun. PMID 16096261
    4. The ion transporter superfamily. Prakash S, et al. Biochim Biophys Acta, 2003 Dec 3. PMID 14643936
    5. Classification of 29 families of secondary transport proteins into a single structural class using hydropathy profile analysis. Lolkema JS, et al. J Mol Biol, 2003 Apr 11. PMID 12662917

    See all (11) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Process Evidence Code Pubs
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative transporter YbiR

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      853647..854765
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415339.1 putative transporter YbiR [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415339.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376FPL8
      Conserved Domains (1) summary
      cd01117
      Location:8 → 366
      YbiR_permease; Putative anion permease YbiR. Based on sequence similarity, YbiR proteins are predicted to function as anion translocating permeases in eubacteria, archaea and plants. They belong to ArsB/NhaD superfamily of permeases that have been shown to translocate ...
    Nucleotide Protein
    Heading Accession and Version

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