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    sfmD putative fimbrial usher protein SfmD [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 945160, updated on 3-Dec-2024

    Summary

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    Official Symbol
    sfmD
    Official Full Name
    putative fimbrial usher protein SfmD
    Primary source
    ECOCYC:G6292
    Locus tag
    b0532
    See related
    ASAP:ABE-0001830
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK0525
    Summary
    FimD family. [More information is available at EcoGene: EG13883]. SfmD is an uncharacterized protein. [More information is available at EcoCyc: G6292].
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    Genomic context

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    Sequence:
    NC_000913.3 (559697..562300)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative fimbrial protein SfmA Neighboring gene putative fimbrial chaperone SfmC Neighboring gene putative fimbrial adhesin protein SfmH Neighboring gene putative fimbrial protein SfmF

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Quantification of Escherichia coli by kinetic 5'-nuclease polymerase chain reaction (real-time PCR) oriented to sfmD gene. Kaclíková E, et al. Lett Appl Microbiol, 2005. PMID 16033509
    2. Evidence for a novel domain of bacterial outer membrane ushers. Capitani G, et al. Proteins, 2006 Dec 1. PMID 17066380
    3. Bacterial outer membrane ushers contain distinct targeting and assembly domains for pilus biogenesis. Thanassi DG, et al. J Bacteriol, 2002 Nov. PMID 12399496, Free PMC Article
    4. Analysis of the requirements for pilus biogenesis at the outer membrane usher and the function of the usher C-terminus. So SS, et al. Mol Microbiol, 2006 Apr. PMID 16573686
    5. The outer membrane usher forms a twin-pore secretion complex. Li H, et al. J Mol Biol, 2004 Dec 10. PMID 15561151

    See all (18) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables fimbrial usher porin activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables fimbrial usher porin activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    involved_in pilus assembly IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in pilus assembly IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in transmembrane transport IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    is_active_in cell outer membrane IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    located_in cell outer membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    putative fimbrial usher protein SfmD

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      559697..562300
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415065.1 putative fimbrial usher protein SfmD [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415065.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376FMY6, A0A6N0IH53, A0A8H9XLY7
      Conserved Domains (1) summary
      PRK15198
      Location:10 → 867
      PRK15198; outer membrane usher protein FimD
    Nucleotide Protein
    Heading Accession and Version

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