U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

Links from GEO Profiles

    • Showing Current items.

    Ssbp4 single stranded DNA binding protein 4 [ Mus musculus (house mouse) ]

    Gene ID: 76900, updated on 9-Dec-2024

    Summary

    Official Symbol
    Ssbp4provided by MGI
    Official Full Name
    single stranded DNA binding protein 4provided by MGI
    Primary source
    MGI:MGI:1924150
    See related
    Ensembl:ENSMUSG00000070003 AllianceGenome:MGI:1924150
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    Ssdp4; Sspb4; 1210002E11Rik
    Summary
    Predicted to be involved in positive regulation of transcription by RNA polymerase II. Predicted to be active in nucleus. Is expressed in several structures, including central nervous system; gonad; limb; retina; and trunk somite. Orthologous to human SSBP4 (single stranded DNA binding protein 4). [provided by Alliance of Genome Resources, Dec 2024]
    Expression
    Ubiquitous expression in adrenal adult (RPKM 126.2), ovary adult (RPKM 102.6) and 27 other tissues See more
    Orthologs
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    See Ssbp4 in Genome Data Viewer
    Location:
    8 B3.3; 8 34.15 cM
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 8 NC_000074.7 (71050135..71061084, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 8 NC_000074.6 (70597485..70608387, complement)

    Chromosome 8 - NC_000074.7Genomic Context describing neighboring genes Neighboring gene elongation factor RNA polymerase II Neighboring gene STARR-positive B cell enhancer ABC_E1369 Neighboring gene myo-inositol 1-phosphate synthase A1 Neighboring gene STARR-positive B cell enhancer ABC_E3777 Neighboring gene STARR-positive B cell enhancer ABC_E3778 Neighboring gene STARR-positive B cell enhancer ABC_E3779 Neighboring gene leucine rich repeat containing 25 Neighboring gene STARR-positive B cell enhancer ABC_E6645 Neighboring gene STARR-seq mESC enhancer starr_21778 Neighboring gene growth differentiation factor 15

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (2) 

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

    Preferred Names
    single-stranded DNA-binding protein 4

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001372468.1NP_001359397.1  single-stranded DNA-binding protein 4 isoform 1

      Status: VALIDATED

      Source sequence(s)
      AC157774
      UniProtKB/TrEMBL
      Q99LZ8
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81366
      SSDP; Single-stranded DNA binding protein, SSDP
    2. NM_001372469.1NP_001359398.1  single-stranded DNA-binding protein 4 isoform 2

      Status: VALIDATED

      Source sequence(s)
      AC157774
      UniProtKB/TrEMBL
      Q99LZ8
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81346
      SSDP; Single-stranded DNA binding protein, SSDP
    3. NM_001372470.1NP_001359399.1  single-stranded DNA-binding protein 4 isoform 3

      Status: VALIDATED

      Source sequence(s)
      AC157774
      UniProtKB/TrEMBL
      Q99LZ8
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81366
      SSDP; Single-stranded DNA binding protein, SSDP
    4. NM_001372471.1NP_001359400.1  single-stranded DNA-binding protein 4 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC157774
      UniProtKB/TrEMBL
      Q99LZ8
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81338
      SSDP; Single-stranded DNA binding protein, SSDP
    5. NM_001372472.1NP_001359401.1  single-stranded DNA-binding protein 4 isoform 4

      Status: VALIDATED

      Source sequence(s)
      AC157774
      UniProtKB/TrEMBL
      Q99LZ8
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81338
      SSDP; Single-stranded DNA binding protein, SSDP
    6. NM_001372473.1NP_001359402.1  single-stranded DNA-binding protein 4 isoform 5

      Status: VALIDATED

      Source sequence(s)
      AC157774
      UniProtKB/TrEMBL
      Q99LZ8
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81356
      SSDP; Single-stranded DNA binding protein, SSDP
    7. NM_001372475.1NP_001359404.1  single-stranded DNA-binding protein 4 isoform 7

      Status: VALIDATED

      Source sequence(s)
      AC157774
      UniProtKB/TrEMBL
      Q99LZ8
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81318
      SSDP; Single-stranded DNA binding protein, SSDP
    8. NM_001372476.1NP_001359405.1  single-stranded DNA-binding protein 4 isoform 8

      Status: VALIDATED

      Source sequence(s)
      AC157774
      UniProtKB/TrEMBL
      A0A1B0GRX5
      Related
      ENSMUSP00000147704.2, ENSMUST00000210369.2
      Conserved Domains (1) summary
      pfam04503
      Location:1237
      SSDP; Single-stranded DNA binding protein, SSDP
    9. NM_001372477.1NP_001359406.1  single-stranded DNA-binding protein 4 isoform 9

      Status: VALIDATED

      Source sequence(s)
      AC157774
      Conserved Domains (1) summary
      pfam04503
      Location:1237
      SSDP; Single-stranded DNA binding protein, SSDP
    10. NM_001372478.1NP_001359407.1  single-stranded DNA-binding protein 4 isoform 9

      Status: VALIDATED

      Source sequence(s)
      AC157774
      Conserved Domains (1) summary
      pfam04503
      Location:1237
      SSDP; Single-stranded DNA binding protein, SSDP
    11. NM_001372479.1NP_001359408.1  single-stranded DNA-binding protein 4 isoform 9

      Status: VALIDATED

      Source sequence(s)
      AC157774
      Conserved Domains (1) summary
      pfam04503
      Location:1237
      SSDP; Single-stranded DNA binding protein, SSDP
    12. NM_133772.3NP_598533.2  single-stranded DNA-binding protein 4 isoform 6

      See identical proteins and their annotated locations for NP_598533.2

      Status: VALIDATED

      Source sequence(s)
      AC157774
      Consensus CDS
      CCDS22374.1
      UniProtKB/TrEMBL
      Q3U4B1, Q99LZ8
      Related
      ENSMUSP00000059039.10, ENSMUST00000049908.11
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81338
      SSDP; Single-stranded DNA binding protein, SSDP

    RNA

    1. NR_164176.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC157774
      Related
      ENSMUST00000211134.2
    2. NR_164177.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC157774
    3. NR_164178.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC157774

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000074.7 Reference GRCm39 C57BL/6J

      Range
      71050135..71061084 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_011242338.4XP_011240640.1  single-stranded DNA-binding protein 4 isoform X6

      UniProtKB/TrEMBL
      Q99LZ8
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81346
      SSDP; Single-stranded DNA binding protein, SSDP
    2. XM_036154374.1XP_036010267.1  single-stranded DNA-binding protein 4 isoform X5

      UniProtKB/TrEMBL
      Q99LZ8
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81356
      SSDP; Single-stranded DNA binding protein, SSDP
    3. XM_011242337.4XP_011240639.1  single-stranded DNA-binding protein 4 isoform X4

      UniProtKB/TrEMBL
      Q99LZ8
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81384
      SSDP; Single-stranded DNA binding protein, SSDP
    4. XM_006509784.5XP_006509847.1  single-stranded DNA-binding protein 4 isoform X1

      See identical proteins and their annotated locations for XP_006509847.1

      UniProtKB/TrEMBL
      Q99LZ8
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81384
      SSDP; Single-stranded DNA binding protein, SSDP
    5. XM_036154375.1XP_036010268.1  single-stranded DNA-binding protein 4 isoform X7

      UniProtKB/TrEMBL
      Q99LZ8
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81318
      SSDP; Single-stranded DNA binding protein, SSDP
    6. XM_030243848.2XP_030099708.1  single-stranded DNA-binding protein 4 isoform X7

      UniProtKB/TrEMBL
      Q99LZ8
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81318
      SSDP; Single-stranded DNA binding protein, SSDP
    7. XM_011242336.4XP_011240638.1  single-stranded DNA-binding protein 4 isoform X3

      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81364
      SSDP; Single-stranded DNA binding protein, SSDP
    8. XM_006509790.5XP_006509853.1  single-stranded DNA-binding protein 4 isoform X5

      UniProtKB/TrEMBL
      Q99LZ8
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81356
      SSDP; Single-stranded DNA binding protein, SSDP
    9. XM_036154372.1XP_036010265.1  single-stranded DNA-binding protein 4 isoform X1

      UniProtKB/TrEMBL
      Q99LZ8
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81384
      SSDP; Single-stranded DNA binding protein, SSDP
    10. XM_036154376.1XP_036010269.1  single-stranded DNA-binding protein 4 isoform X8

      Conserved Domains (1) summary
      pfam04503
      Location:45290
      SSDP; Single-stranded DNA binding protein, SSDP
    11. XM_036154373.1XP_036010266.1  single-stranded DNA-binding protein 4 isoform X2

      UniProtKB/TrEMBL
      Q99LZ8
      Conserved Domains (2) summary
      smart00667
      Location:1743
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:81366
      SSDP; Single-stranded DNA binding protein, SSDP