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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001033196.3 → NP_001028368.2 NFX1-type zinc finger-containing protein 1 isoform a
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) encodes the longer isoform (a).
- Source sequence(s)
-
AL591711
- Consensus CDS
-
CCDS38337.1
- UniProtKB/Swiss-Prot
- A2A5R3, Q3U016, Q3UD71, Q3UEZ0, Q8R151
- Related
- ENSMUSP00000049404.8, ENSMUST00000048988.14
- Conserved Domains (6) summary
-
- cd06008
Location:1453 → 1497
- NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
- PRK03918
Location:1597 → 1808
- PRK03918; DNA double-strand break repair ATPase Rad50
- cd18808
Location:1068 → 1244
- SF1_C_Upf1; C-terminal helicase domain of Upf1-like family helicases
- cd17936
Location:971 → 1066
- EEXXEc_NFX1; EEXXE-box helicase domain of NFX1
- pfam01500
Location:1425 → 1563
- Keratin_B2; Keratin, high sulfur B2 protein
- pfam13086
Location:897 → 1031
- AAA_11; AAA domain
-
NM_001291162.2 → NP_001278091.1 NFX1-type zinc finger-containing protein 1 isoform b
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) lacks several 5' exons but contains an alternate 5' terminal exon, and it thus differs in the 5' UTR and 5' coding region, compared to variant 1. The encoded isoform (b) has a distinct N-terminus and is shorter than isoform a.
- Source sequence(s)
-
AL591711
- Consensus CDS
-
CCDS71198.1
- UniProtKB/TrEMBL
-
A2A5R6
- Related
- ENSMUSP00000072867.6, ENSMUST00000067584.7
- Conserved Domains (4) summary
-
- cd06008
Location:589 → 633
- NF-X1-zinc-finger; Presumably a zinc binding domain, which has been shown to bind to DNA in the human nuclear transcriptional repressor NF-X1. The zinc finger can be characterized by the pattern C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C. The NF-X1 zinc finger ...
- COG1112
Location:63 → 383
- DNA2; Superfamily I DNA and/or RNA helicase [Replication, recombination and repair]
- pfam15042
Location:626 → 690
- LELP1; Late cornified envelope-like proline-rich protein 1
- cl22977
Location:180 → 363
- UvrD_C_2; UvrD-like helicase C-terminal domain
-
NM_001424669.1 → NP_001411598.1 NFX1-type zinc finger-containing protein 1 isoform a
Status: VALIDATED
- Source sequence(s)
-
AL591711
- UniProtKB/Swiss-Prot
- A2A5R3, Q3U016, Q3UD71, Q3UEZ0, Q8R151
-
NM_001424676.1 → NP_001411605.1 NFX1-type zinc finger-containing protein 1 isoform a
Status: VALIDATED
- Source sequence(s)
-
AL591711
- UniProtKB/Swiss-Prot
- A2A5R3, Q3U016, Q3UD71, Q3UEZ0, Q8R151
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000068.8 Reference GRCm39 C57BL/6J
- Range
-
166877713..166904926 complement
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)