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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001177647.3 → NP_001171118.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform 2 precursor
See identical proteins and their annotated locations for NP_001171118.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) lacks two alternate in-frame exons in the central coding region, and uses an alternate in-frame splice site in the 3' coding region, compared to variant 4. The encoded isoform (2) is shorter than isoform 3.
- Source sequence(s)
-
AL808126
- Consensus CDS
-
CCDS50708.1
- UniProtKB/Swiss-Prot
-
P97797
- UniProtKB/TrEMBL
-
A0A0R4J1Z7
- Related
- ENSMUSP00000125004.2, ENSMUST00000160276.2
- Conserved Domains (1) summary
-
- cl11960
Location:35 → 146
- Ig; Immunoglobulin domain
-
NM_001291019.2 → NP_001277948.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform 3 precursor
See identical proteins and their annotated locations for NP_001277948.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) represents the longest transcript and encodes the longest isoform (3). Both variants 4 and 5 encode isoform 3.
- Source sequence(s)
-
AL808126
- Consensus CDS
-
CCDS71142.1
- UniProtKB/Swiss-Prot
- A0A0R4J1Z7, E0CYM8, E9QPT7, O08907, O35924, O88555, O88556, P97796, P97797, Q8R559, Q9QX57, Q9WTN4
- UniProtKB/TrEMBL
-
Q2M4I8
- Related
- ENSMUSP00000049022.8, ENSMUST00000049262.14
- Conserved Domains (4) summary
-
- cd00096
Location:35 → 38
- Ig; Ig strand A [structural motif]
- cd05772
Location:148 → 250
- IgC1_SIRP_domain_2; Signal-regulatory protein (SIRP) immunoglobulin-like domain 2; member of the C1-set of Ig superfamily (IgSF) domains
- cd16085
Location:253 → 348
- IgC1_SIRP_domain_3; Signal-regulatory protein (SIRP) immunoglobulin-like domain 3; member of the C1-set of Ig superfamily (IgSF) domains
- cl11960
Location:35 → 146
- Ig; Immunoglobulin domain
-
NM_001291020.2 → NP_001277949.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform 3 precursor
See identical proteins and their annotated locations for NP_001277949.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR compared to variant 4. Both variants 4 and 5 encode isoform 3.
- Source sequence(s)
-
AL808126
- Consensus CDS
-
CCDS71142.1
- UniProtKB/Swiss-Prot
- A0A0R4J1Z7, E0CYM8, E9QPT7, O08907, O35924, O88555, O88556, P97796, P97797, Q8R559, Q9QX57, Q9WTN4
- UniProtKB/TrEMBL
-
Q2M4I8
- Related
- ENSMUSP00000124048.2, ENSMUST00000161620.8
- Conserved Domains (4) summary
-
- cd00096
Location:35 → 38
- Ig; Ig strand A [structural motif]
- cd05772
Location:148 → 250
- IgC1_SIRP_domain_2; Signal-regulatory protein (SIRP) immunoglobulin-like domain 2; member of the C1-set of Ig superfamily (IgSF) domains
- cd16085
Location:253 → 348
- IgC1_SIRP_domain_3; Signal-regulatory protein (SIRP) immunoglobulin-like domain 3; member of the C1-set of Ig superfamily (IgSF) domains
- cl11960
Location:35 → 146
- Ig; Immunoglobulin domain
-
NM_001291021.2 → NP_001277950.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform 4 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) lacks two alternate in-frame exons in the central coding region, compared to variant 4, resulting in an isoform (4) that is shorter than isoform 3. Variants 6 and 10 both encode the same isoform (4).
- Source sequence(s)
-
AL808126
- Consensus CDS
-
CCDS71143.1
- UniProtKB/TrEMBL
-
E9QPT7
- Related
- ENSMUSP00000096713.4, ENSMUST00000099113.10
- Conserved Domains (1) summary
-
- cl11960
Location:35 → 146
- Ig; Immunoglobulin domain
-
NM_001291022.2 → NP_001277951.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform 5
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) lacks an alternate in-frame exon in the 5' coding region and two in-frame exons in the central coding region, and also uses an alternate in-frame splice site in the 3' coding region, compared to variant 4. The encoded isoform (5) is shorter than isoform 3.
- Source sequence(s)
-
AL808126
- Consensus CDS
-
CCDS79845.1
- UniProtKB/TrEMBL
-
E0CX65
- Related
- ENSMUSP00000124888.2, ENSMUST00000163034.8
-
NM_001355158.2 → NP_001342087.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform 1 precursor
Status: VALIDATED
- Description
- Transcript Variant: This variant (8) encodes isoform 1. Variants 1, 8, 11, and 12 all encode the same isoform (1).
- Source sequence(s)
-
AL808126
- Consensus CDS
-
CCDS16729.1
- UniProtKB/TrEMBL
- Q2M4I8, Q6P6I8
- Related
- ENSMUSP00000137611.2, ENSMUST00000179001.8
- Conserved Domains (3) summary
-
- cd05772
Location:148 → 251
- IgC_SIRP_domain_2; Signal-regulatory protein (SIRP) immunoglobulin-like domain 2
- cd16085
Location:253 → 356
- IgC_SIRP_domain_3; Signal-regulatory protein (SIRP) immunoglobulin-like domain 3
- cl11960
Location:35 → 146
- Ig; Immunoglobulin domain
-
NM_001355160.1 → NP_001342089.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform 6
Status: VALIDATED
- Source sequence(s)
-
AL808126
- UniProtKB/TrEMBL
-
Q2M4I8
- Conserved Domains (3) summary
-
- cd05772
Location:136 → 239
- IgC_SIRP_domain_2; Signal-regulatory protein (SIRP) immunoglobulin-like domain 2
- cd16085
Location:241 → 344
- IgC_SIRP_domain_3; Signal-regulatory protein (SIRP) immunoglobulin-like domain 3
- cl11960
Location:23 → 134
- Ig; Immunoglobulin domain
-
NM_001420766.1 → NP_001407695.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform 4 precursor
Status: VALIDATED
- Source sequence(s)
-
AL808126
- UniProtKB/Swiss-Prot
- A0A0R4J1Z7, E0CYM8, E9QPT7, O08907, O35924, O88555, O88556, P97796, P97797, Q8R559, Q9QX57, Q9WTN4
- UniProtKB/TrEMBL
-
Q2M4I8
-
NM_001420767.1 → NP_001407696.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform 1 precursor
Status: VALIDATED
- Source sequence(s)
-
AL808126
- UniProtKB/TrEMBL
- Q2M4I8, Q6P6I8
- Related
- ENSMUSP00000099492.2, ENSMUST00000103203.8
-
NM_001420768.1 → NP_001407697.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform 1 precursor
Status: VALIDATED
- Source sequence(s)
-
AL808126
- UniProtKB/TrEMBL
- Q2M4I8, Q6P6I8
-
NM_001420769.1 → NP_001407698.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform 7 precursor
Status: VALIDATED
- Source sequence(s)
-
AL808126
-
NM_001420770.1 → NP_001407699.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform 8
Status: VALIDATED
- Source sequence(s)
-
AL808126
-
NM_001420771.1 → NP_001407700.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform 9
Status: VALIDATED
- Source sequence(s)
-
AL808126
-
NM_001420772.1 → NP_001407701.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform 10
Status: VALIDATED
- Source sequence(s)
-
AL808126
-
NM_007547.5 → NP_031573.2 tyrosine-protein phosphatase non-receptor type substrate 1 isoform 1 precursor
See identical proteins and their annotated locations for NP_031573.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) uses an alternate in-frame splice site in the 3' coding region, compared to variant 4, resulting in an isoform (1) that is shorter than isoform 3. Variants 1, 8, 11, and 12 all encode the same isoform (1).
- Source sequence(s)
-
AL808126
- Consensus CDS
-
CCDS16729.1
- UniProtKB/TrEMBL
- Q2M4I8, Q6P6I8
- Related
- ENSMUSP00000099491.4, ENSMUST00000103202.10
- Conserved Domains (3) summary
-
- cd05772
Location:148 → 251
- IgC_SIRP_domain_2; Signal-regulatory protein (SIRP) immunoglobulin-like domain 2
- cd16085
Location:253 → 356
- IgC_SIRP_domain_3; Signal-regulatory protein (SIRP) immunoglobulin-like domain 3
- cl11960
Location:35 → 146
- Ig; Immunoglobulin domain
The following sections contain reference sequences that belong to a
specific genome build. Explain
This section includes genomic Reference
Sequences (RefSeqs) from all assemblies on which this gene is annotated, such as
RefSeqs for chromosomes and scaffolds (contigs) from both reference and alternate
assemblies. Model RNAs and proteins are also reported here.
Reference GRCm39 C57BL/6J
Genomic
-
NC_000068.8 Reference GRCm39 C57BL/6J
- Range
-
129432962..129474148
- Download
- GenBank, FASTA, Sequence Viewer (Graphics)
mRNA and Protein(s)
-
XM_017316564.2 → XP_017172053.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform X1
- UniProtKB/TrEMBL
-
Q2M4I8
- Conserved Domains (4) summary
-
- cd00096
Location:28 → 31
- Ig; Ig strand A [structural motif]
- cd05772
Location:141 → 243
- IgC1_SIRP_domain_2; Signal-regulatory protein (SIRP) immunoglobulin-like domain 2; member of the C1-set of Ig superfamily (IgSF) domains
- cd16085
Location:246 → 341
- IgC1_SIRP_domain_3; Signal-regulatory protein (SIRP) immunoglobulin-like domain 3; member of the C1-set of Ig superfamily (IgSF) domains
- cl11960
Location:28 → 139
- Ig; Immunoglobulin domain
-
XM_036159695.1 → XP_036015588.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform X2
- UniProtKB/TrEMBL
-
Q2M4I8
- Conserved Domains (4) summary
-
- cd00096
Location:28 → 31
- Ig; Ig strand A [structural motif]
- cd05772
Location:141 → 243
- IgC1_SIRP_domain_2; Signal-regulatory protein (SIRP) immunoglobulin-like domain 2; member of the C1-set of Ig superfamily (IgSF) domains
- cd16085
Location:246 → 341
- IgC1_SIRP_domain_3; Signal-regulatory protein (SIRP) immunoglobulin-like domain 3; member of the C1-set of Ig superfamily (IgSF) domains
- cl11960
Location:28 → 139
- Ig; Immunoglobulin domain
-
XM_017316568.2 → XP_017172057.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform X5
- UniProtKB/TrEMBL
-
E9QPT7
- Conserved Domains (1) summary
-
- cl11960
Location:35 → 146
- Ig; Immunoglobulin domain
-
XM_017316569.2 → XP_017172058.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform X6
- UniProtKB/Swiss-Prot
-
P97797
- UniProtKB/TrEMBL
-
A0A0R4J1Z7
- Conserved Domains (1) summary
-
- cl11960
Location:35 → 146
- Ig; Immunoglobulin domain
-
XM_036159694.1 → XP_036015587.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform X1
- UniProtKB/TrEMBL
-
Q2M4I8
- Conserved Domains (4) summary
-
- cd00096
Location:28 → 31
- Ig; Ig strand A [structural motif]
- cd05772
Location:141 → 243
- IgC1_SIRP_domain_2; Signal-regulatory protein (SIRP) immunoglobulin-like domain 2; member of the C1-set of Ig superfamily (IgSF) domains
- cd16085
Location:246 → 341
- IgC1_SIRP_domain_3; Signal-regulatory protein (SIRP) immunoglobulin-like domain 3; member of the C1-set of Ig superfamily (IgSF) domains
- cl11960
Location:28 → 139
- Ig; Immunoglobulin domain
-
XM_036159692.1 → XP_036015585.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform X3
- UniProtKB/Swiss-Prot
- A0A0R4J1Z7, E0CYM8, E9QPT7, O08907, O35924, O88555, O88556, P97796, P97797, Q8R559, Q9QX57, Q9WTN4
- UniProtKB/TrEMBL
-
Q2M4I8
- Conserved Domains (4) summary
-
- cd00096
Location:35 → 38
- Ig; Ig strand A [structural motif]
- cd05772
Location:148 → 250
- IgC1_SIRP_domain_2; Signal-regulatory protein (SIRP) immunoglobulin-like domain 2; member of the C1-set of Ig superfamily (IgSF) domains
- cd16085
Location:253 → 348
- IgC1_SIRP_domain_3; Signal-regulatory protein (SIRP) immunoglobulin-like domain 3; member of the C1-set of Ig superfamily (IgSF) domains
- cl11960
Location:35 → 146
- Ig; Immunoglobulin domain
-
XM_030248735.2 → XP_030104595.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform X1
- UniProtKB/TrEMBL
-
Q2M4I8
- Conserved Domains (4) summary
-
- cd00096
Location:28 → 31
- Ig; Ig strand A [structural motif]
- cd05772
Location:141 → 243
- IgC1_SIRP_domain_2; Signal-regulatory protein (SIRP) immunoglobulin-like domain 2; member of the C1-set of Ig superfamily (IgSF) domains
- cd16085
Location:246 → 341
- IgC1_SIRP_domain_3; Signal-regulatory protein (SIRP) immunoglobulin-like domain 3; member of the C1-set of Ig superfamily (IgSF) domains
- cl11960
Location:28 → 139
- Ig; Immunoglobulin domain
-
XM_030248738.2 → XP_030104598.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform X2
- UniProtKB/TrEMBL
-
Q2M4I8
- Conserved Domains (4) summary
-
- cd00096
Location:28 → 31
- Ig; Ig strand A [structural motif]
- cd05772
Location:141 → 243
- IgC1_SIRP_domain_2; Signal-regulatory protein (SIRP) immunoglobulin-like domain 2; member of the C1-set of Ig superfamily (IgSF) domains
- cd16085
Location:246 → 341
- IgC1_SIRP_domain_3; Signal-regulatory protein (SIRP) immunoglobulin-like domain 3; member of the C1-set of Ig superfamily (IgSF) domains
- cl11960
Location:28 → 139
- Ig; Immunoglobulin domain
-
XM_036159696.1 → XP_036015589.1 tyrosine-protein phosphatase non-receptor type substrate 1 isoform X2
- UniProtKB/TrEMBL
-
Q2M4I8
- Conserved Domains (4) summary
-
- cd00096
Location:28 → 31
- Ig; Ig strand A [structural motif]
- cd05772
Location:141 → 243
- IgC1_SIRP_domain_2; Signal-regulatory protein (SIRP) immunoglobulin-like domain 2; member of the C1-set of Ig superfamily (IgSF) domains
- cd16085
Location:246 → 341
- IgC1_SIRP_domain_3; Signal-regulatory protein (SIRP) immunoglobulin-like domain 3; member of the C1-set of Ig superfamily (IgSF) domains
- cl11960
Location:28 → 139
- Ig; Immunoglobulin domain
The following Reference Sequences have been suppressed. Explain
These RefSeqs were suppressed for the
cited reason(s). Suppressed RefSeqs do not appear in BLAST databases, related
sequence links, or BLAST links (BLink), but may still be retrieved by clicking on
their accession.version below.
-
NM_001177646.1: Suppressed sequence
- Description
- NM_001177646.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript.