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    yqeJ protein YqeJ [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947328, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yqeJ
    Official Full Name
    protein YqeJ
    Primary source
    ECOCYC:G7468
    Locus tag
    b2848
    See related
    ASAP:ABE-0009354
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2846
    Summary
    This gene is a remnant of the type three secretion system (T3SS) pathogenicity island ETT2. [More information is available at EcoGene: EG13101]. yqeJ is located within a remnant of an ETT2 (type III secretion system) pathogenicity island that is fully present in pathogenic strains such as Escherichia coli O157:H7 and at least partially present in most sequenced Escherichia coli and Shigella strains . [More information is available at EcoCyc: G7468].
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    Genomic context

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    Sequence:
    NC_000913.3 (2989304..2989786)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative transporter YqeG Neighboring gene putative LuxR family transcriptional regulator YqeH Neighboring gene putative transcriptional regulator YqeI Neighboring gene uncharacterized protein YqeL Neighboring gene protein YqeK

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The ETT2 gene cluster, encoding a second type III secretion system from Escherichia coli, is present in the majority of strains but has undergone widespread mutational attrition. Ren CP, et al. J Bacteriol, 2004 Jun. PMID 15150243, Free PMC Article
    2. A degenerate type III secretion system from septicemic Escherichia coli contributes to pathogenesis. Ideses D, et al. J Bacteriol, 2005 Dec. PMID 16291689, Free PMC Article
    3. Phenotypic screening of Escherichia coli K-12 Tn5 insertion libraries, using whole-genome oligonucleotide microarrays. Winterberg KM, et al. Appl Environ Microbiol, 2005 Jan. PMID 15640221, Free PMC Article
    4. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
    5. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article

    See all (8) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    protein YqeJ

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2989304..2989786
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_417325.4 protein YqeJ [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_417325.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A5B9AST1
      Conserved Domains (1) summary
      cl25912
      Location:22 → 131
      Bacuni_01323_like; Uncharacterized protein conserved in Bacteroidetes
    Nucleotide Protein
    Heading Accession and Version

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