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    Nlrx1 NLR family member X1 [ Mus musculus (house mouse) ]

    Gene ID: 270151, updated on 27-Nov-2024

    Summary

    Official Symbol
    Nlrx1provided by MGI
    Official Full Name
    NLR family member X1provided by MGI
    Primary source
    MGI:MGI:2429611
    See related
    Ensembl:ENSMUSG00000032109 AllianceGenome:MGI:2429611
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Mus musculus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
    Also known as
    NOD9
    Summary
    Predicted to enable ATP binding activity. Acts upstream of or within negative regulation of canonical NF-kappaB signal transduction; negative regulation of cytokine production; and regulation of defense response. Located in mitochondrion. Is expressed in cerebral cortex ventricular layer and cortical plate. Orthologous to human NLRX1 (NLR family member X1). [provided by Alliance of Genome Resources, Nov 2024]
    Expression
    Ubiquitous expression in colon adult (RPKM 11.8), adrenal adult (RPKM 10.3) and 27 other tissues See more
    Orthologs
    NEW
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    Try the new Transcript table

    Genomic context

    See Nlrx1 in Genome Data Viewer
    Location:
    9 A5.2; 9 24.84 cM
    Exon count:
    12
    Annotation release Status Assembly Chr Location
    RS_2024_02 current GRCm39 (GCF_000001635.27) 9 NC_000075.7 (44164010..44179896, complement)
    108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 9 NC_000075.6 (44252713..44268599, complement)

    Chromosome 9 - NC_000075.7Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 153 Neighboring gene NHERF family PDZ scaffold protein 4 Neighboring gene ATP binding cassette subfamily G member 4 Neighboring gene histone H4 transcription factor Neighboring gene CapStarr-seq enhancer MGSCv37_chr9:44113766-44114058

    Genomic regions, transcripts, and products

    Expression

    • Project title: Mouse ENCODE transcriptome data
    • Description: RNA profiling data sets generated by the Mouse ENCODE project.
    • BioProject: PRJNA66167
    • Publication: PMID 25409824
    • Analysis date: n/a

    Bibliography

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?

    Variation

    Alleles

    Alleles of this type are documented at Mouse Genome Informatics  (MGI)
    • Endonuclease-mediated (4) 
    • Targeted (6)  1 citation

    Pathways from PubChem

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Markers

    Potential readthrough

    Included gene: Nherf4

    Gene Ontology Provided by MGI

    Function Evidence Code Pubs
    enables ATP binding IEA
    Inferred from Electronic Annotation
    more info
     
    enables protein binding IPI
    Inferred from Physical Interaction
    more info
    PubMed 
    Component Evidence Code Pubs
    located_in mitochondrial outer membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in mitochondrion HDA PubMed 
    is_active_in mitochondrion IBA
    Inferred from Biological aspect of Ancestor
    more info
     
    located_in mitochondrion ISO
    Inferred from Sequence Orthology
    more info
     
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
     
    located_in plasma membrane ISO
    Inferred from Sequence Orthology
    more info
     

    General protein information

    Preferred Names
    NLR family member X1
    Names
    nucleotide-binding domain and leucine-rich repeat containing

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001163742.1NP_001157214.1  NLR family member X1

      See identical proteins and their annotated locations for NP_001157214.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      AK166689, BC035045, BY196718
      Consensus CDS
      CCDS23100.1
      UniProtKB/Swiss-Prot
      Q3TL44, Q3UKJ1, Q80W30, Q8C249
      Related
      ENSMUSP00000127531.2, ENSMUST00000168499.9
      Conserved Domains (3) summary
      cd00116
      Location:698903
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:698726
      LRR_RI; leucine-rich repeat [structural motif]
      cl21455
      Location:161320
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    2. NM_001163743.1NP_001157215.1  NLR family member X1

      See identical proteins and their annotated locations for NP_001157215.1

      Status: VALIDATED

      Description
      Transcript Variant: This variant (1) represents the longest transcript. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      AC124577, BC035045
      Consensus CDS
      CCDS23100.1
      UniProtKB/Swiss-Prot
      Q3TL44, Q3UKJ1, Q80W30, Q8C249
      Related
      ENSMUSP00000126555.2, ENSMUST00000169651.3
      Conserved Domains (3) summary
      cd00116
      Location:698903
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:698726
      LRR_RI; leucine-rich repeat [structural motif]
      cl21455
      Location:161320
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
    3. NM_178420.3NP_848507.2  NLR family member X1

      See identical proteins and their annotated locations for NP_848507.2

      Status: VALIDATED

      Description
      Transcript Variant: This variant (2) differs in the 5' UTR compared to variant 1. Variants 1, 2 and 3 encode the same protein.
      Source sequence(s)
      AC124577, AK145988, BC035045
      Consensus CDS
      CCDS23100.1
      UniProtKB/Swiss-Prot
      Q3TL44, Q3UKJ1, Q80W30, Q8C249
      Related
      ENSMUSP00000034621.9, ENSMUST00000034621.16
      Conserved Domains (3) summary
      cd00116
      Location:698903
      LRR_RI; Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond ...
      sd00033
      Location:698726
      LRR_RI; leucine-rich repeat [structural motif]
      cl21455
      Location:161320
      P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases

    RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCm39 C57BL/6J

    Genomic

    1. NC_000075.7 Reference GRCm39 C57BL/6J

      Range
      44164010..44179896 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)