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    rnd RNase D [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946328, updated on 17-Dec-2024

    Summary

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    Official Symbol
    rnd
    Official Full Name
    RNase D
    Primary source
    ECOCYC:EG10858
    Locus tag
    b1804
    See related
    ASAP:ABE-0006003
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1802
    Summary
    RNase D is an exonuclease involved in the 3' ribonucleolytic processing of precursor tRNA. [More information is available at EcoCyc: EG10858].
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    Genomic context

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    Sequence:
    NC_000913.3 (1886864..1887991, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene carnitine monooxygenase subunit YeaW Neighboring gene carnitine monooxygenase subunit YeaX Neighboring gene long-chain-fatty-acid--CoA ligase Neighboring gene Slp family lipoprotein YeaY

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic mapping of mutation in Escherichia coli leading to a temperature-sensitive RNase D. Zaniewski R, et al. Mol Gen Genet, 1982. PMID 6283310
    2. Identification of an Escherichia coli nuclease acting on structurally altered transfer RNA molecules. Ghosh RK, et al. J Biol Chem, 1978 Feb 25. PMID 342522
    3. A uridine-rich sequence required for translation of prokaryotic mRNA. Zhang J, et al. Proc Natl Acad Sci U S A, 1992 Apr 1. PMID 1372983, Free PMC Article
    4. Cloning, characterization, and effects of overexpression of the Escherichia coli rnd gene encoding RNase D. Zhang JR, et al. J Bacteriol, 1988 Feb. PMID 2828310, Free PMC Article
    5. Escherichia coli RNase D: sequencing of the rnd structural gene and purification of the overexpressed protein. Zhang JR, et al. Nucleic Acids Res, 1988 Jul 25. PMID 3041371, Free PMC Article

    See all (25) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. N-terminus verified by Edman degradation on complete protein
      Title: Escherichia coli RNase D: sequencing of the rnd structural gene and purification of the overexpressed protein.
    2. Crystal structure of Escherichia coli RNase D
      Title: Crystal structure of Escherichia coli RNase D, an exoribonuclease involved in structured RNA processing.
    Submit: New GeneRIF Correction

    Pathways from PubChem

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    General gene information

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    Gene Ontology Provided by EcoCyc

    Function Evidence Code Pubs
    enables 3'-5' exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables 3'-5'-RNA exonuclease activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables 3'-5'-RNA exonuclease activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables exonuclease activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleic acid binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables nucleotide binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables ribonuclease D activity IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    enables ribonuclease D activity IDA
    Inferred from Direct Assay
    more info
    		 PubMed 
    enables ribonuclease D activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within tRNA 3'-end processing EXP
    Inferred from Experiment
    more info
    		 PubMed 
    involved_in tRNA 3'-end processing IBA
    Inferred from Biological aspect of Ancestor
    more info
    		  
    involved_in tRNA 3'-end processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    involved_in tRNA processing IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    RNase D
    NP_416318.1

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1886864..1887991 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416318.1 RNase D [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416318.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A0E0XYF1, A0A0H3PMQ3, A0A4P8C278, A0A979H259, A0A9P2MMD5, A0AAV3I6Y6, A7ZMS5, B7L6T2, B7NBF0, C3T6J7
      Conserved Domains (1) summary
      PRK10829
      Location:1 → 373
      PRK10829; ribonuclease D; Provisional
    Nucleotide Protein
    Heading Accession and Version

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