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    F25E5.16 BTB domain-containing protein [ Caenorhabditis elegans ]

    Gene ID: 179131, updated on 18-Sep-2024

    Summary

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    Official Symbol
    F25E5.16
    Official Full Name
    BTB domain-containing protein
    Primary source
    WormBase:WBGene00017792
    Locus tag
    CELE_F25E5.16
    See related
    AllianceGenome:WB:WBGene00017792
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Caenorhabditis elegans (strain: Bristol N2)
    Lineage
    Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida; Rhabditina; Rhabditomorpha; Rhabditoidea; Rhabditidae; Peloderinae; Caenorhabditis
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    Genomic context

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    See F25E5.16 in Genome Data Viewer
    Location:
    chromosome: V
    Exon count:
    5
    Sequence:
    Chromosome: V; NC_003283.11 (7438285..7439998)

    Chromosome V - NC_003283.11Genomic Context describing neighboring genes Neighboring gene Histidine-rich glycoprotein;S39A8 protein Neighboring gene Secreted protein Neighboring gene Peptidase S1 domain-containing protein Neighboring gene Nuclear Hormone Receptor family

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_003283.11

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genome sequence of the nematode C. elegans: a platform for investigating biology. C. elegans Sequencing Consortium. Science, 1998 Dec 11. PMID 9851916

    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    General protein information

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    Preferred Names
    BTB domain-containing protein
    NP_001256085.1
    • Confirmed by transcript evidence
    NP_001359877.1
    • Confirmed by transcript evidence

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_003283.11 Reference assembly

      Range
      7438285..7439998
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001269156.3 → NP_001256085.1  BTB domain-containing protein [Caenorhabditis elegans]

      See identical proteins and their annotated locations for NP_001256085.1

      Status: REVIEWED

      UniProtKB/TrEMBL
      H2KYV6
      Conserved Domains (2) summary
      smart00225
      Location:160 → 252
      BTB; Broad-Complex, Tramtrack and Bric a brac
      cd00121
      Location:45 → 132
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...

    2. NM_001373053.3 → NP_001359877.1  BTB domain-containing protein [Caenorhabditis elegans]

      Status: REVIEWED

      UniProtKB/TrEMBL
      B7E2K7
      Conserved Domains (2) summary
      cl02446
      Location:70 → 139
      MATH; MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins. Meprins comprise a class of extracellular metalloproteases which are anchored to the membrane ...
      cl38908
      Location:160 → 221
      BTB_POZ; BTB (Broad-Complex, Tramtrack and Bric a brac)/POZ (poxvirus and zinc finger) domain superfamily
    Nucleotide Protein
    Heading Accession and Version

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