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    yphD sugar ABC transporter permease [ Escherichia coli O157:H7 str. Sakai ]

    Gene ID: 914920, updated on 6-Jun-2024

    Summary

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    Gene symbol
    yphD
    Gene description
    sugar ABC transporter permease
    Locus tag
    ECs_3412
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli O157:H7 str. Sakai (strain: Sakai, substrain: RIMD 0509952, serovar: O157:H7)
    Lineage
    Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
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    Genomic context

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    Sequence:
    NC_002695.2 (3396463..3397461, complement)

    NC_002695.2Genomic Context describing neighboring genes Neighboring gene mutarotase superfamily protein Neighboring gene pseudo Neighboring gene sugar ABC transporter ATPase Neighboring gene sugar ABC transporter periplasmic binding protein

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_002695.2

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Comparative analysis of the whole set of rRNA operons between an enterohemorrhagic Escherichia coli O157:H7 Sakai strain and an Escherichia coli K-12 strain MG1655. Ohnishi M, et al. Syst Appl Microbiol, 2000 Oct. PMID 11108008
    2. Complete nucleotide sequence of the prophage VT2-Sakai carrying the verotoxin 2 genes of the enterohemorrhagic Escherichia coli O157:H7 derived from the Sakai outbreak. Makino K, et al. Genes Genet Syst, 1999 Oct. PMID 10734605
    3. Complete nucleotide sequence of the prophage VT1-Sakai carrying the Shiga toxin 1 genes of the enterohemorrhagic Escherichia coli O157:H7 strain derived from the Sakai outbreak. Yokoyama K, et al. Gene, 2000 Nov 27. PMID 11111050
    4. Complete genome sequence of enterohemorrhagic Escherichia coli O157:H7 and genomic comparison with a laboratory strain K-12. Hayashi T, et al. DNA Res, 2001 Feb 28. PMID 11258796

    GeneRIFs: Gene References Into Functions

    General protein information

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    Preferred Names
    sugar ABC transporter permease

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_002695.2 Reference assembly

      Range
      3396463..3397461 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_311439.1 sugar ABC transporter permease [Escherichia coli O157:H7 str. Sakai]

      See identical proteins and their annotated locations for NP_311439.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376M422, A0A3R0MRX1, A0A6C9F3F1
      Conserved Domains (1) summary
      COG1172
      Location:22 → 330
      AraH; Ribose/xylose/arabinose/galactoside ABC-type transport system, permease component [Carbohydrate transport and metabolism]
    Nucleotide Protein
    Heading Accession and Version

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