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    yihM putative TIM barrel domain-containing protein YihM [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 948367, updated on 3-Dec-2024

    Summary

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    Official Symbol
    yihM
    Official Full Name
    putative TIM barrel domain-containing protein YihM
    Primary source
    ECOCYC:EG11839
    Locus tag
    b3873
    See related
    ASAP:ABE-0012653
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK3866
    Summary
    Expression of yihM is upregulated by hexane and is increased in an organic solvent-tolerant strain. [More information is available at EcoCyc: EG11839].
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    Genomic context

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    Sequence:
    NC_000913.3 (4061165..4062145)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene 50S ribosomal subunit assembly factor BipA Neighboring gene putative DNA-binding transcriptional regulator YihL Neighboring gene putative transporter YihN Neighboring gene putative outer membrane porin L

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Analysis of organic solvent tolerance in Escherichia coli using gene expression profiles from DNA microarrays. Hayashi S, et al. J Biosci Bioeng, 2003. PMID 16233423
    2. Analysis of the Escherichia coli genome. III. DNA sequence of the region from 87.2 to 89.2 minutes. Plunkett G 3rd, et al. Nucleic Acids Res, 1993 Jul 25. PMID 8346018, Free PMC Article
    3. A functional update of the Escherichia coli K-12 genome. Serres MH, et al. Genome Biol, 2001. PMID 11574054, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    putative TIM barrel domain-containing protein YihM

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      4061165..4062145
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_418309.1 putative TIM barrel domain-containing protein YihM [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_418309.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A6N0IK54
      Conserved Domains (1) summary
      cl23721
      Location:41 → 238
      AP2Ec; AP endonuclease family 2; These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites; the alignment also contains hexulose-6-phosphate isomerases, enzymes that catalyze the epimerization of ...
    Nucleotide Protein
    Heading Accession and Version

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