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    ypfN PF13980 family protein YpfN [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 1450286, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ypfN
    Official Full Name
    PF13980 family protein YpfN
    Primary source
    ECOCYC:G0-10463
    Locus tag
    b4547
    See related
    ASAP:ABE-0285068
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK2468
    Summary
    There are YpfN homologs in Salmonella, Yersinia and other bacteria. [More information is available at EcoGene: EG14399].
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    Genomic context

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    Sequence:
    NC_000913.3 (2592762..2592962)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene putative reductase YffB Neighboring gene succinyl-diaminopimelate desuccinylase Neighboring gene esterase YpfH Neighboring gene tRNA(Met) cytidine acetyltransferase

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Identification of novel small RNAs using comparative genomics and microarrays. Wassarman KM, et al. Genes Dev, 2001 Jul 1. PMID 11445539, Free PMC Article
    2. Membranome: a database for proteome-wide analysis of single-pass membrane proteins. Lomize AL, et al. Nucleic Acids Res, 2017 Jan 4. PMID 27510400, Free PMC Article
    3. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    4. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503
    5. Escherichia coli K-12: a cooperatively developed annotation snapshot--2005. Riley M, et al. Nucleic Acids Res, 2006. PMID 16397293, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Gene Ontology Provided by EcoCyc

    Component Evidence Code Pubs
    located_in plasma membrane IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in plasma membrane RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    PF13980 family protein YpfN

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      2592762..2592962
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. YP_588465.1 PF13980 family protein YpfN [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for YP_588465.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0AAJ3NZ97
      Conserved Domains (1) summary
      PRK13664
      Location:1 → 62
      PRK13664; hypothetical protein; Provisional
    Nucleotide Protein
    Heading Accession and Version

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