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    ynaK ParB-like nuclease domain-containing protein YnaK [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 947417, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ynaK
    Official Full Name
    ParB-like nuclease domain-containing protein YnaK
    Primary source
    ECOCYC:G6688
    Locus tag
    b1365
    See related
    ASAP:ABE-0004571
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1363
    Summary
    Blue light activation of the YgcE anti-repressor relieves YcgF repression of ynaK (Tschowr, 2009). [More information is available at EcoGene: EG14296].
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    Genomic context

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    Sequence:
    NC_000913.3 (1425377..1425640)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene pseudo Neighboring gene putative prophage outer membrane lipoprotein RzoR Neighboring gene K(+) transporter TrkG Neighboring gene putative uncharacterized protein YdaY Neighboring gene putative prophage tail length tape measure domain-containing protein YnaA Neighboring gene pseudo Neighboring gene IS5 family transposase and trans-activator

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. The BLUF-EAL protein YcgF acts as a direct anti-repressor in a blue-light response of Escherichia coli. Tschowri N, et al. Genes Dev, 2009 Feb 15. PMID 19240136, Free PMC Article
    2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    3. A novel family of Escherichia coli toxin-antitoxin gene pairs. Brown JM, et al. J Bacteriol, 2003 Nov. PMID 14594833, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    General protein information

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    Preferred Names
    ParB-like nuclease domain-containing protein YnaK

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1425377..1425640
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      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_415883.1 ParB-like nuclease domain-containing protein YnaK [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_415883.1

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376MVJ9
      Conserved Domains (1) summary
      cd16403
      Location:11 → 85
      ParB_N_like_MT; ParB N-terminal-like domain, some attached to C-terminal S-adenosylmethionine-dependent methyltransferase
    Nucleotide Protein
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