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    ydfU protein YdfU [ Escherichia coli str. K-12 substr. MG1655 ]

    Gene ID: 946108, updated on 3-Dec-2024

    Summary

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    Official Symbol
    ydfU
    Official Full Name
    protein YdfU
    Primary source
    ECOCYC:G6831
    Locus tag
    b1560
    See related
    ASAP:ABE-0005209
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Escherichia coli str. K-12 substr. MG1655 (strain: K-12, substrain: MG1655)
    Lineage
    Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
    Also known as
    ECK1554
    Summary
    Expression of ydfU is increased 3.1-fold upon exposure to nitric oxide; however, ydfU does not appear to play a significant role in NO resistance . [More information is available at EcoCyc: G6831].
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    Genomic context

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    Sequence:
    NC_000913.3 (1643255..1644304, complement)

    NC_000913.3Genomic Context describing neighboring genes Neighboring gene protein YnfS Neighboring gene putative antitermination protein Q Neighboring gene protein Rem Neighboring gene toxic protein HokD

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_000913.3

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. New genes implicated in the protection of anaerobically grown Escherichia coli against nitric oxide. Justino MC, et al. J Biol Chem, 2005 Jan 28. PMID 15546870
    2. Prophages and bacterial genomics: what have we learned so far? Casjens S. Mol Microbiol, 2003 Jul. PMID 12886937
    3. The binary protein-protein interaction landscape of Escherichia coli. Rajagopala SV, et al. Nat Biotechnol, 2014 Mar. PMID 24561554, Free PMC Article
    4. Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110. Hayashi K, et al. Mol Syst Biol, 2006. PMID 16738553, Free PMC Article
    5. The complete genome sequence of Escherichia coli K-12. Blattner FR, et al. Science, 1997 Sep 5. PMID 9278503

    See all (6) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General protein information

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    Preferred Names
    protein YdfU

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_000913.3 Reference assembly

      Range
      1643255..1644304 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NP_416078.4 protein YdfU [Escherichia coli str. K-12 substr. MG1655]

      See identical proteins and their annotated locations for NP_416078.4

      Status: PROVISIONAL

      UniProtKB/TrEMBL
      A0A376WZD9, A0A6M9WVT2, A0A8S7CDL5
      Conserved Domains (1) summary
      cl23554
      Location:137 → 346
      DUF968; Protein of unknown function (DUF968)
    Nucleotide Protein
    Heading Accession and Version

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